# HG changeset patch
# User gga
# Date 1542989226 18000
# Node ID cc969225947ddb7137536f00ec87282e8195b76c
# Parent 25d8003e820782a8d9c5276e9210e6a3e0994d90
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
diff -r 25d8003e8207 -r cc969225947d chado.py
--- a/chado.py Mon Nov 05 12:15:28 2018 -0500
+++ b/chado.py Fri Nov 23 11:07:06 2018 -0500
@@ -406,6 +406,7 @@
# there.
data = _list_organisms(ci, *args, **kwargs)
cache[cacheKey] = data
+ ci.session.close()
return data
try:
# The cache key may or may not be in the cache at this point, it
@@ -413,12 +414,14 @@
# when we checked above and now, so we reference the object from the
# cache in preparation to return.
data = cache[cacheKey]
+ ci.session.close()
return data
except KeyError:
# If access fails due to eviction, we will fail over and can ensure that
# data is inserted.
data = _list_organisms(ci, *args, **kwargs)
cache[cacheKey] = data
+ ci.session.close()
return data
@@ -447,6 +450,7 @@
data = _list_analyses(ci, *args, **kwargs)
cache[cacheKey] = data
+ ci.session.close()
return data
try:
# The cache key may or may not be in the cache at this point, it
@@ -454,12 +458,14 @@
# when we checked above and now, so we reference the object from the
# cache in preparation to return.
data = cache[cacheKey]
+ ci.session.close()
return data
except KeyError:
# If access fails due to eviction, we will fail over and can ensure that
# data is inserted.
data = _list_analyses(ci, *args, **kwargs)
cache[cacheKey] = data
+ ci.session.close()
return data
diff -r 25d8003e8207 -r cc969225947d export_export_gff3.xml
--- a/export_export_gff3.xml Mon Nov 05 12:15:28 2018 -0500
+++ b/export_export_gff3.xml Fri Nov 23 11:07:06 2018 -0500
@@ -1,12 +1,12 @@
-
-
- macros.xml
-
-
+
+
+ macros.xml
+
+
- $results
]]>
-
-
-
+
+
+
-
-
+
+
-
-
-
-
-
+
+
+
+
+
Export organism features as GFF3
@HELP@
-
+
diff -r 25d8003e8207 -r cc969225947d macros.xml
--- a/macros.xml Mon Nov 05 12:15:28 2018 -0500
+++ b/macros.xml Fri Nov 23 11:07:06 2018 -0500
@@ -2,7 +2,7 @@
- python-chado
+ python-chado
jq
@@ -16,7 +16,7 @@
- 2.2.2
+ 2.2.3