Mercurial > repos > gga > chado_expression_add_biomaterial
comparison expression_add_biomaterial.xml @ 2:ecf81582c5cc draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
| author | gga |
|---|---|
| date | Fri, 23 Nov 2018 11:14:54 -0500 |
| parents | 676c49ac9cb5 |
| children | b0684eb7d975 |
comparison
equal
deleted
inserted
replaced
| 1:e60fc2879221 | 2:ecf81582c5cc |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="expression_add_biomaterial" name="Chado biomaterial add" version="@WRAPPER_VERSION@.0"> | 2 <tool id="expression_add_biomaterial" name="Chado biomaterial add" version="@WRAPPER_VERSION@.0"> |
| 3 <description></description> | 3 <description></description> |
| 4 <macros> | 4 <macros> |
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 8 <code file="chado.py"/> | 8 <code file="chado.py"/> |
| 39 <!-- arguments --> | 39 <!-- arguments --> |
| 40 <param name="biomaterial_name" label="Biomaterial Name" argument="biomaterial_name" type="text" help="Biomaterial name" /> | 40 <param name="biomaterial_name" label="Biomaterial Name" argument="biomaterial_name" type="text" help="Biomaterial name" /> |
| 41 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" /> | 41 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" /> |
| 42 | 42 |
| 43 <!-- options --> | 43 <!-- options --> |
| 44 <param name="description" label="Description" argument="description" type="text" help="Description of the biomaterial" optional="true" /> | 44 <param name="description" label="Description" argument="--description" type="text" help="Description of the biomaterial" optional="true" /> |
| 45 <param name="biomaterial_provider" label="Biomaterial Provider" argument="biomaterial_provider" type="text" help="Biomaterial provider name" optional="true" /> | 45 <param name="biomaterial_provider" label="Biomaterial Provider" argument="--biomaterial_provider" type="text" help="Biomaterial provider name" optional="true" /> |
| 46 <param name="biosample_accession" label="Biosample Accession" argument="biosample_accession" type="text" help="Biosample accession number" optional="true" /> | 46 <param name="biosample_accession" label="Biosample Accession" argument="--biosample_accession" type="text" help="Biosample accession number" optional="true" /> |
| 47 <param name="sra_accession" label="Sra Accession" argument="sra_accession" type="text" help="SRA accession number" optional="true" /> | 47 <param name="sra_accession" label="Sra Accession" argument="--sra_accession" type="text" help="SRA accession number" optional="true" /> |
| 48 <param name="bioproject_accession" label="Bioproject Accession" argument="bioproject_accession" type="text" help="Bioproject accession number" optional="true" /> | 48 <param name="bioproject_accession" label="Bioproject Accession" argument="--bioproject_accession" type="text" help="Bioproject accession number" optional="true" /> |
| 49 <param name="attributes" label="Attributes" argument="attributes" type="data" format="json" help="Custom attributes (In JSON dict form)" optional="true" /> | 49 <param name="attributes" label="Attributes" argument="--attributes" type="data" format="json" help="Custom attributes (In JSON dict form)" optional="true" /> |
| 50 | 50 |
| 51 <expand macro="wait_for"/> | 51 <expand macro="wait_for"/> |
| 52 | 52 |
| 53 </inputs> | 53 </inputs> |
| 54 <outputs> | 54 <outputs> |