Mercurial > repos > gga > chado_expression_delete_biomaterials

comparison expression_delete_biomaterials.xml @ 2:8b1250de656a draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 11:11:02 -0500
parents 3af5ba30d0cd
children 769bcd006045
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1:662e0e3c56b4 2:8b1250de656a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="expression_delete_biomaterials" name="Chado biomaterials delete" version="@WRAPPER_VERSION@.0"> 2 <tool id="expression_delete_biomaterials" name="Chado biomaterials delete" version="@WRAPPER_VERSION@.0">
3 <description></description> 3 <description></description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <code file="chado.py"/> 8 <code file="chado.py"/>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 @AUTH@ 10 @AUTH@
11 11
12 chakin expression delete_biomaterials 12 chakin expression delete_biomaterials
13 13
14 #if $names: 14 #if $names:
23 #if $analysis_id: 23 #if $analysis_id:
24 --analysis_id '$analysis_id' 24 --analysis_id '$analysis_id'
25 #end if 25 #end if
26 > $results 26 > $results
27 ]]></command> 27 ]]></command>
28 <inputs> 28 <inputs>
29 <!-- options --> 29 <!-- options -->
30 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" /> 30 <param argument="--organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" />
31 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" /> 31 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" />
32 <param name="names" label="Names" argument="names" type="data" format="json" help="JSON list of biomaterial names to delete." optional="true" /> 32 <param name="names" label="Names" argument="--names" type="data" format="json" help="JSON list of biomaterial names to delete." optional="true" />
33 <param name="ids" label="Ids" argument="ids" type="data" format="json" help="JSON list of biomaterial ids to delete." optional="true" /> 33 <param name="ids" label="Ids" argument="--ids" type="data" format="json" help="JSON list of biomaterial ids to delete." optional="true" />
34 34
35 <expand macro="wait_for"/> 35 <expand macro="wait_for"/>
36 </inputs> 36 </inputs>
37 <outputs> 37 <outputs>
38 <data format="txt" name="results"/> 38 <data format="txt" name="results"/>
39 </outputs> 39 </outputs>
40 <help> 40 <help>
41 Will delete biomaterials based on selector. Only one selector will be used. 41 Will delete biomaterials based on selector. Only one selector will be used.
42 42
43 @HELP@ 43 @HELP@
44 </help> 44 </help>
45 </tool> 45 </tool>