Mercurial > repos > gga > chado_expression_delete_biomaterials

comparison expression_delete_biomaterials.xml @ 5:9e40ea0d1530 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:37:25 -0400
parents 769bcd006045
children 79d117de8e30
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4:769bcd006045 5:9e40ea0d1530
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <code file="chado.py"/> 8 <code file="chado.py"/>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 @AUTH@ 10 @START_PSQL@ &&
11 11
12 chakin expression delete_biomaterials 12 chakin expression delete_biomaterials
13 13
14 #if $names: 14 #if $names:
15 --names '$names' 15 --names '$names'
22 #end if 22 #end if
23 #if $analysis_id: 23 #if $analysis_id:
24 --analysis_id '$analysis_id' 24 --analysis_id '$analysis_id'
25 #end if 25 #end if
26 > '$results' 26 > '$results'
27
28 && @ZIP_PSQL@
27 ]]></command> 29 ]]></command>
28 <inputs> 30 <inputs>
31 <expand macro="psql_target"/>
29 <!-- options --> 32 <!-- options -->
30 <param argument="--organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" /> 33 <param argument="--organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" />
31 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" /> 34 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" />
32 <param name="names" label="Names" argument="--names" type="data" format="json" help="JSON list of biomaterial names to delete." optional="true" /> 35 <param name="names" label="Names" argument="--names" type="data" format="json" help="JSON list of biomaterial names to delete." optional="true" />
33 <param name="ids" label="Ids" argument="--ids" type="data" format="json" help="JSON list of biomaterial ids to delete." optional="true" /> 36 <param name="ids" label="Ids" argument="--ids" type="data" format="json" help="JSON list of biomaterial ids to delete." optional="true" />
34 37
35 <expand macro="wait_for"/> 38 <expand macro="wait_for"/>
36 </inputs> 39 </inputs>
37 <outputs> 40 <outputs>
38 <data format="txt" name="results"/> 41 <data format="txt" name="results"/>
42 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
43 <filter>psql_target['method'] == "pgtools"</filter>
44 </data>
39 </outputs> 45 </outputs>
40 <help> 46 <help>
41 Will delete biomaterials based on selector. Only one selector will be used. 47 Will delete biomaterials based on selector. Only one selector will be used.
42 48
43 @HELP@ 49 @HELP@