Mercurial > repos > gga > chado_expression_delete_biomaterials
comparison expression_delete_biomaterials.xml @ 5:9e40ea0d1530 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author | gga |
---|---|
date | Mon, 08 Jul 2019 05:37:25 -0400 |
parents | 769bcd006045 |
children | 79d117de8e30 |
comparison
equal
deleted
inserted
replaced
4:769bcd006045 | 5:9e40ea0d1530 |
---|---|
5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 </macros> | 6 </macros> |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
8 <code file="chado.py"/> | 8 <code file="chado.py"/> |
9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
10 @AUTH@ | 10 @START_PSQL@ && |
11 | 11 |
12 chakin expression delete_biomaterials | 12 chakin expression delete_biomaterials |
13 | 13 |
14 #if $names: | 14 #if $names: |
15 --names '$names' | 15 --names '$names' |
22 #end if | 22 #end if |
23 #if $analysis_id: | 23 #if $analysis_id: |
24 --analysis_id '$analysis_id' | 24 --analysis_id '$analysis_id' |
25 #end if | 25 #end if |
26 > '$results' | 26 > '$results' |
27 | |
28 && @ZIP_PSQL@ | |
27 ]]></command> | 29 ]]></command> |
28 <inputs> | 30 <inputs> |
31 <expand macro="psql_target"/> | |
29 <!-- options --> | 32 <!-- options --> |
30 <param argument="--organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" /> | 33 <param argument="--organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" /> |
31 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" /> | 34 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" /> |
32 <param name="names" label="Names" argument="--names" type="data" format="json" help="JSON list of biomaterial names to delete." optional="true" /> | 35 <param name="names" label="Names" argument="--names" type="data" format="json" help="JSON list of biomaterial names to delete." optional="true" /> |
33 <param name="ids" label="Ids" argument="--ids" type="data" format="json" help="JSON list of biomaterial ids to delete." optional="true" /> | 36 <param name="ids" label="Ids" argument="--ids" type="data" format="json" help="JSON list of biomaterial ids to delete." optional="true" /> |
34 | 37 |
35 <expand macro="wait_for"/> | 38 <expand macro="wait_for"/> |
36 </inputs> | 39 </inputs> |
37 <outputs> | 40 <outputs> |
38 <data format="txt" name="results"/> | 41 <data format="txt" name="results"/> |
42 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}"> | |
43 <filter>psql_target['method'] == "pgtools"</filter> | |
44 </data> | |
39 </outputs> | 45 </outputs> |
40 <help> | 46 <help> |
41 Will delete biomaterials based on selector. Only one selector will be used. | 47 Will delete biomaterials based on selector. Only one selector will be used. |
42 | 48 |
43 @HELP@ | 49 @HELP@ |