Mercurial > repos > gga > chado_expression_get_biomaterials
view expression_get_biomaterials.xml @ 2:3df5eaa8ae44 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author | gga |
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date | Fri, 23 Nov 2018 11:18:22 -0500 |
parents | 2dc7f958f3ff |
children | 426fba75486d |
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<?xml version="1.0"?> <tool id="expression_get_biomaterials" name="Chado biomaterial get" version="@WRAPPER_VERSION@.0"> <description></description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <code file="chado.py"/> <command detect_errors="aggressive"><![CDATA[ @AUTH@ chakin expression get_biomaterials #if $provider_id: --provider_id '$provider_id' #end if #if $biomaterial_id: --biomaterial_id '$biomaterial_id' #end if #if $organism_id: --organism_id '$organism_id' #end if #if $biomaterial_name: --biomaterial_name '$biomaterial_name' #end if #if $analysis_id: --analysis_id '$analysis_id' #end if | jq -S . > $results ]]></command> <inputs> <!-- options --> <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" optional="true" /> <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" optional="true" /> <param name="provider_id" label="Provider Id" argument="provider_id" type="text" help="Limit query to the selected provider" optional="true" /> <param name="biomaterial_id" label="Biomaterial Id" argument="biomaterial_id" type="text" help="Limit query to the selected biomaterial id" optional="true" /> <param name="biomaterial_name" label="Biomaterial Name" argument="biomaterial_name" type="text" help="Limit query to the selected biomaterial name" optional="true" /> <expand macro="wait_for"/> </inputs> <outputs> <data format="json" name="results"/> </outputs> <help> List biomaterials in the database @HELP@ </help> </tool>