Mercurial > repos > gga > chado_feature_get_features
comparison feature_get_features.xml @ 10:7028154f9c93 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
| author | gga |
|---|---|
| date | Mon, 08 Jul 2019 05:39:06 -0400 |
| parents | 51f5137232ff |
| children | 95221c68838f |
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| 9:51f5137232ff | 10:7028154f9c93 |
|---|---|
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 8 <code file="chado.py"/> | 8 <code file="chado.py"/> |
| 9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
| 10 @AUTH@ | 10 @START_PSQL@ && |
| 11 | 11 |
| 12 chakin feature get_features | 12 chakin feature get_features |
| 13 | 13 |
| 14 #if $organism: | 14 #if $organism: |
| 15 --organism_id '$organism' | 15 --organism_id '$organism' |
| 23 #if $uniquename: | 23 #if $uniquename: |
| 24 --uniquename '$uniquename' | 24 --uniquename '$uniquename' |
| 25 #end if | 25 #end if |
| 26 | 26 |
| 27 | jq -S . > '$results' | 27 | jq -S . > '$results' |
| 28 | |
| 29 && @STOP_PSQL@ | |
| 28 ]]></command> | 30 ]]></command> |
| 29 <inputs> | 31 <inputs> |
| 30 <!-- options --> | 32 <expand macro="psql_target"/> |
| 31 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" /> | 33 <!-- options --> |
| 32 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> | 34 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" /> |
| 33 <param name="name" label="Name" argument="--name" type="text" help="name filter" /> | 35 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> |
| 34 <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" /> | 36 <param name="name" label="Name" argument="--name" type="text" help="name filter" /> |
| 37 <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" /> | |
| 35 | 38 |
| 36 </inputs> | 39 </inputs> |
| 37 <outputs> | 40 <outputs> |
| 38 <data format="json" name="results"/> | 41 <data format="json" name="results"/> |
| 39 </outputs> | 42 </outputs> |