Mercurial > repos > gga > chado_feature_get_features
comparison feature_get_features.xml @ 12:df8527b4f2b8 draft
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 1640878827bdc3870b6f34eded3a3f7571a1849f"
| author | gga |
|---|---|
| date | Wed, 21 Aug 2019 05:12:35 -0400 |
| parents | 95221c68838f |
| children |
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| 11:95221c68838f | 12:df8527b4f2b8 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@.1"> | 2 <tool id="feature_get_features" name="Chado features get" version="@WRAPPER_VERSION@"> |
| 3 <description></description> | 3 <description></description> |
| 4 <macros> | 4 <macros> |
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
| 10 @START_PSQL@ && | 10 @START_PSQL@ && |
| 11 | 11 |
| 12 chakin feature get_features | 12 chakin feature get_features |
| 13 | 13 |
| 14 #if $organism: | 14 #if $organism_id: |
| 15 --organism_id '$organism' | 15 --organism_id '$organism_id' |
| 16 #end if | 16 #end if |
| 17 #if $analysis_id: | 17 #if $analysis_id: |
| 18 --analysis_id '$analysis_id' | 18 --analysis_id '$analysis_id' |
| 19 #end if | 19 #end if |
| 20 #if $name: | 20 #if $name: |
| 29 @STOP_PSQL@ | 29 @STOP_PSQL@ |
| 30 ]]></command> | 30 ]]></command> |
| 31 <inputs> | 31 <inputs> |
| 32 <expand macro="psql_target"/> | 32 <expand macro="psql_target"/> |
| 33 <!-- options --> | 33 <!-- options --> |
| 34 <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" /> | 34 <param argument="--organism_id" type="select" dynamic_options="list_organisms()" label="Organism" /> |
| 35 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> | 35 <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> |
| 36 <param name="name" label="Name" argument="--name" type="text" help="name filter" /> | 36 <param name="name" label="Name" argument="--name" type="text" help="name filter" /> |
| 37 <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" /> | 37 <param name="uniquename" label="Uniquename" argument="--uniquename" type="text" help="uniquename filter" /> |
| 38 | 38 |
| 39 </inputs> | 39 </inputs> |