Mercurial > repos > gga > chado_feature_load_fasta
diff README.rst @ 0:65d8d92aa0b5 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
| author | gga |
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| date | Thu, 21 Jun 2018 08:41:33 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Thu Jun 21 08:41:33 2018 -0400 @@ -0,0 +1,43 @@ +Galaxy-chado +============= + +Galaxy tools to interface with Tripal using python-chado + +Dependencies +------------ + +You will need to install some python modules in the Galaxy virtualenv for these +tools to be fully functional: + +.. code:: bash + + . /path/to/galaxy/.venv/bin/activate + pip install future chado + deactivate + +Environment +----------- + +The following environment variables must be set: + ++--------------------------------+-----------------------------------------------------------+ +| ENV | Use | ++================================+===========================================================+ +| ``$GALAXY_CHADO_DBHOST`` | Host of the Chado database | ++--------------------------------+-----------------------------------------------------------+ +| ``$GALAXY_CHADO_DBNAME`` | Name of the Chado database | ++--------------------------------+-----------------------------------------------------------+ +| ``$GALAXY_CHADO_DBUSER`` | Username to connect to the database | ++--------------------------------+-----------------------------------------------------------+ +| ``$GALAXY_CHADO_DBPASS`` | Password to connect to the database | ++--------------------------------+-----------------------------------------------------------+ +| ``$GALAXY_CHADO_DBSCHEMA`` | Database schema. | ++--------------------------------+-----------------------------------------------------------+ +| ``$GALAXY_CHADO_DBPORT`` | Port of the Chado database | ++--------------------------------+-----------------------------------------------------------+ + + +License +------- + +All python scripts and wrappers are licensed under MIT license.