Mercurial > repos > gga > chado_feature_load_gff

diff feature_load_gff.xml @ 11:1282f881e3bf draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:38:50 -0400
parents 4bd9bbb4dbab
children ab5ac677d9c6
line wrap: on
line diff
--- a/feature_load_gff.xml	Tue Mar 05 05:17:33 2019 -0500
+++ b/feature_load_gff.xml	Mon Jul 08 05:38:50 2019 -0400
@@ -7,7 +7,7 @@
     <code file="chado.py"/>
     <expand macro="requirements"/>
     <command detect_errors="aggressive"><![CDATA[
-@AUTH@
+@START_PSQL@ &&
 
 chakin feature load_gff
 '$gff'
@@ -42,8 +42,11 @@
 --quiet
 
  > '$results'
+
+ && @ZIP_PSQL@
     ]]></command>
     <inputs>
+        <expand macro="psql_target"/>
         <!-- arguments -->
         <param name="gff" label="Gff" argument="gff" type="data" format="gff" help="Path to the Fasta file to load" />
         <param argument="--analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
@@ -80,6 +83,9 @@
     </inputs>
     <outputs>
         <data format="txt" name="results"/>
+        <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
+    			<filter>psql_target['method'] == "pgtools"</filter>
+    		</data>
     </outputs>
     <help>
 Load features from a gff file