Mercurial > repos > gga > chado_feature_load_go

comparison feature_load_go.xml @ 5:bde9421d7918 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:37:40 -0400
parents a69e00e985da
children 0ff787a87407
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4:a69e00e985da 5:bde9421d7918
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <code file="chado.py"/> 7 <code file="chado.py"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 @AUTH@ 10 @START_PSQL@ &&
11 11
12 chakin feature load_go 12 chakin feature load_go
13 '$input' 13 '$input'
14 '$organism_id' 14 '$organism_id'
15 '$analysis_id' 15 '$analysis_id'
26 #end if 26 #end if
27 27
28 $skip_missing 28 $skip_missing
29 29
30 > '$results' 30 > '$results'
31
32 && @ZIP_PSQL@
31 ]]></command> 33 ]]></command>
32 <inputs> 34 <inputs>
35 <expand macro="psql_target"/>
33 <!-- arguments --> 36 <!-- arguments -->
34 <param name="input" label="GO annotation" argument="input" type="data" format="tabular" help="Path to the GO annotation file to load" /> 37 <param name="input" label="GO annotation" argument="input" type="data" format="tabular" help="Path to the GO annotation file to load" />
35 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" /> 38 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
36 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" /> 39 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" />
37 40
52 55
53 <expand macro="wait_for"/> 56 <expand macro="wait_for"/>
54 </inputs> 57 </inputs>
55 <outputs> 58 <outputs>
56 <data format="txt" name="results"/> 59 <data format="txt" name="results"/>
60 <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
61 <filter>psql_target['method'] == "pgtools"</filter>
62 </data>
57 </outputs> 63 </outputs>
58 <help> 64 <help>
59 Load GO annotation from a tabular file 65 Load GO annotation from a tabular file
60 66
61 @HELP@ 67 @HELP@