view organism_add_organism.xml @ 7:ad220cb1ce2b draft

planemo upload for repository commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 11:05:58 -0500
parents 5d566012d85f
children 7b552f5cb694
line wrap: on
line source

<?xml version="1.0"?>
<tool id="organism_add_organism" name="Chado organism add" version="@WRAPPER_VERSION@.0">
	<expand macro="requirements"/>
	<command detect_errors="aggressive"><![CDATA[

chakin organism add_organism

#if $comment:
  --comment '$comment'
#end if

| jq -S . > $results
    <!-- arguments -->
	<param name="genus" label="Genus" argument="genus" type="text" help="The genus of the organism" />
	<param name="species" label="Species" argument="species" type="text" help="The species of the organism" />
	<param name="common" label="Common" argument="common" type="text" help="The common name of the organism" />
	<param name="abbr" label="Abbr" argument="abbr" type="text" help="The abbreviation of the organism" />

    <!-- options -->
	<param name="comment" label="Comment" argument="--comment" type="text" help="A comment / description" />

		<data format="json" name="results"/>
Add a new organism to the Chado database