Mercurial > repos > gga > chado_organism_get_organisms
view organism_get_organisms.xml @ 0:1ce80eabf7eb draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author | gga |
---|---|
date | Thu, 21 Jun 2018 08:45:28 -0400 |
parents | |
children | 05e1fd17832b |
line wrap: on
line source
<?xml version="1.0"?> <tool id="organism_get_organisms" name="Chado organism get" version="@WRAPPER_VERSION@.0"> <description></description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ @AUTH@ chakin organism get_organisms #if $organism_id: --organism_id '$organism_id' #end if #if $genus: --genus '$genus' #end if #if $species: --species '$species' #end if #if $common: --common '$common' #end if #if $abbr: --abbr '$abbr' #end if #if $comment: --comment '$comment' #end if | jq -S . > $results ]]></command> <inputs> <!-- arguments --> <!-- options --> <param name="organism_id" label="Organism Id" argument="organism_id" type="integer" help="organism_id filter" optional="True" /> <param name="genus" label="Genus" argument="genus" type="text" help="genus filter" optional="True" /> <param name="species" label="Species" argument="species" type="text" help="species filter" optional="True" /> <param name="common" label="Common" argument="common" type="text" help="common filter" optional="True" /> <param name="abbr" label="Abbr" argument="abbr" type="text" help="abbr filter" optional="True" /> <param name="comment" label="Comment" argument="comment" type="text" help="comment filter" optional="True" /> </inputs> <outputs> <data format="json" name="results"/> </outputs> <help> Get all or some organisms @HELP@ </help> </tool>