Mercurial > repos > gga > chado_phylogeny_gene_order
comparison phylogeny_gene_order.xml @ 0:4854abe5473b draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author | gga |
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date | Thu, 21 Jun 2018 08:41:53 -0400 |
parents | |
children | 9bd557c70bcb |
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-1:000000000000 | 0:4854abe5473b |
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1 <?xml version="1.0"?> | |
2 <tool id="phylogeny_gene_order" name="Chado gene ordering" version="@WRAPPER_VERSION@.0"> | |
3 <description>for phylogeny module</description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements"/> | |
8 <command detect_errors="aggressive"><![CDATA[ | |
9 @AUTH@ | |
10 | |
11 chakin phylogeny gene_order | |
12 | |
13 #if $nuke: | |
14 $nuke | |
15 #end if | |
16 | |
17 > $results | |
18 ]]></command> | |
19 <inputs> | |
20 <!-- options --> | |
21 <param name="nuke" label="Nuke" argument="nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" /> | |
22 <expand macro="wait_for"/> | |
23 | |
24 </inputs> | |
25 <outputs> | |
26 <data format="txt" name="results"/> | |
27 </outputs> | |
28 <help> | |
29 Orders all the genes in the database by their order on their respective chromosomes in the gene_order table (for use in https://github.com/legumeinfo/lis_context_viewer/). | |
30 | |
31 @HELP@ | |
32 </help> | |
33 </tool> |