Mercurial > repos > gga > chado_phylogeny_gene_order
view phylogeny_gene_order.xml @ 8:38998568205a draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author | gga |
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date | Fri, 23 Nov 2018 10:58:35 -0500 |
parents | 9bd557c70bcb |
children | cba2274d1463 |
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<?xml version="1.0"?> <tool id="phylogeny_gene_order" name="Chado gene ordering" version="@WRAPPER_VERSION@.0"> <description>for phylogeny module</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ @AUTH@ chakin phylogeny gene_order $nuke > $results ]]></command> <inputs> <!-- options --> <param name="nuke" label="Nuke" argument="--nuke" type="boolean" truevalue="--nuke" falsevalue="" help="Removes all previous gene ordering data" /> <expand macro="wait_for"/> </inputs> <outputs> <data format="txt" name="results"/> </outputs> <help> Orders all the genes in the database by their order on their respective chromosomes in the gene_order table (for use in https://github.com/legumeinfo/lis_context_viewer/). @HELP@ </help> </tool>