comparison phylogeny_load_tree.xml @ 13:8d44d72730ed draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea

12:4812a8770a8c

#if $input.input_type == "archive":
	mkdir 'newick_arch/' &&
	tar -C 'newick_arch/' -xzvf '${input.newick_arch}' > /dev/null &&
#end if

@AUTH@

chakin phylogeny load_tree

$match_on_name

#else
	'newick_arch/'
#end if

'$analysis_id' > '$results'
    ]]></command>
	<inputs>
		<param argument="analysis_id"
			type="select"
			dynamic_options="list_analyses()"
			label="Analysis" />

		<expand macro="wait_for"/>

	</inputs>
	<outputs>
		<data format="txt" name="results"/>
	</outputs>
	<help>
Load a phylogenetic tree (Newick format) into Chado db

@HELP@

13:8d44d72730ed

#if $input.input_type == "archive":
	mkdir 'newick_arch/' &&
	tar -C 'newick_arch/' -xzvf '${input.newick_arch}' > /dev/null &&
#end if

@START_PSQL@ &&

chakin phylogeny load_tree

$match_on_name

#else
	'newick_arch/'
#end if

'$analysis_id' > '$results'

&& @ZIP_PSQL@
    ]]></command>
	<inputs>
		<expand macro="psql_target"/>
		<param argument="analysis_id"
			type="select"
			dynamic_options="list_analyses()"
			label="Analysis" />

		<expand macro="wait_for"/>

	</inputs>
	<outputs>
		<data format="txt" name="results"/>
    <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
      <filter>psql_target['method'] == "pgtools"</filter>
    </data>
	</outputs>
	<help>
Load a phylogenetic tree (Newick format) into Chado db

@HELP@