diff phylogeny_load_tree.xml @ 8:2b4c9d801a1e draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5

--- a/phylogeny_load_tree.xml	Mon Nov 05 12:10:32 2018 -0500
+++ b/phylogeny_load_tree.xml	Fri Nov 23 10:59:04 2018 -0500
@@ -34,17 +34,17 @@
 	<inputs>
 	    <!-- arguments -->
 		<param name="newick" label="Newick" argument="newick" type="data" format="txt" help="Newick file to load (or directory containing multiple newick files to load)" />
-		<param argument="--analysis_id"
+		<param argument="analysis_id"
 			type="select"
 			dynamic_options="list_analyses()"
 			label="Analysis" />
 
 	    <!-- options -->
-		<param name="name" label="Name" argument="name" type="text" help="The name given to the phylotree entry in the database" />
-		<param name="xref_db" label="Xref db" argument="xref_db" value="null" type="text" help="The name of the db to link dbxrefs for the trees" />
-		<param name="xref_accession" label="Xref Accession" argument="xref_accession" type="text" help="The accession to use for dbxrefs for the trees (assumed same as name unless otherwise specified)" />
-		<param name="match_on_name" label="Match On Name" argument="match_on_name" type="boolean" truevalue="--match_on_name" falsevalue="" help="Match polypeptide features using their name instead of their uniquename" />
-		<param name="prefix" label="Prefix" argument="prefix" type="text" help="Comma-separated list of prefix to be removed from identifiers (e.g species prefixes when loading OrthoFinder output)" />
+		<param name="name" label="Name" argument="--name" type="text" help="The name given to the phylotree entry in the database" />
+		<param name="xref_db" label="Xref db" argument="--xref_db" value="null" type="text" help="The name of the db to link dbxrefs for the trees" />
+		<param name="xref_accession" label="Xref Accession" argument="--xref_accession" type="text" help="The accession to use for dbxrefs for the trees (assumed same as name unless otherwise specified)" />
+		<param name="match_on_name" label="Match On Name" argument="--match_on_name" type="boolean" truevalue="--match_on_name" falsevalue="" help="Match polypeptide features using their name instead of their uniquename" />
+		<param name="prefix" label="Prefix" argument="--prefix" type="text" help="Comma-separated list of prefix to be removed from identifiers (e.g species prefixes when loading OrthoFinder output)" />
 		<expand macro="wait_for"/>
 
 	</inputs>