Mercurial > repos > gga > genenotebook_genenotebook_build
annotate test-data/blast.xml @ 6:12494257f0f0 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 5ad4d3b59c746740b22834fbef55e3e6170b52a8
author | gga |
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date | Fri, 17 Nov 2023 15:53:01 +0000 |
parents | f415e44e71de |
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rev | line source |
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1
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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1 <?xml version="1.0"?> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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3 <BlastOutput> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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4 <BlastOutput_program>blastp</BlastOutput_program> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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5 <BlastOutput_version>diamond 2.0.13</BlastOutput_version> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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6 <BlastOutput_reference>Benjamin Buchfink, Xie Chao, and Daniel Huson (2015), "Fast and sensitive protein alignment using DIAMOND", Nature Methods 12:59-60.</BlastOutput_reference> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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7 <BlastOutput_db>/db/nr/NR_2021-6-16/diamond/nr.dmnd</BlastOutput_db> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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9 <BlastOutput_query-def>MMUCEDO_000001-P1</BlastOutput_query-def> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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10 <BlastOutput_query-len>420</BlastOutput_query-len> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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11 <BlastOutput_param> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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12 <Parameters> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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13 <Parameters_matrix>blosum62</Parameters_matrix> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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14 <Parameters_expect>1e-08</Parameters_expect> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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15 <Parameters_gap-open>11</Parameters_gap-open> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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16 <Parameters_gap-extend>1</Parameters_gap-extend> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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17 <Parameters_filter>F</Parameters_filter> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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18 </Parameters> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
diff
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19 </BlastOutput_param> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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20 <BlastOutput_iterations> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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21 <Iteration> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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22 <Iteration_iter-num>1</Iteration_iter-num> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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23 <Iteration_query-ID>Query_1</Iteration_query-ID> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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24 <Iteration_query-def>MMUCEDO_000001-P1</Iteration_query-def> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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25 <Iteration_query-len>226</Iteration_query-len> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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26 <Iteration_hits> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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27 <Hit> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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28 <Hit_num>1</Hit_num> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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29 <Hit_id>KAG2309741.1</Hit_id> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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30 <Hit_def>hypothetical protein Bca52824_029489 [Brassica carinata]</Hit_def> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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31 <Hit_accession>KAG2309741</Hit_accession> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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32 <Hit_len>226</Hit_len> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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33 <Hit_hsps> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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34 <Hsp> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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35 <Hsp_num>1</Hsp_num> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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36 <Hsp_bit-score>803</Hsp_bit-score> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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37 <Hsp_score>2075</Hsp_score> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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38 <Hsp_evalue>7.84e-293</Hsp_evalue> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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39 <Hsp_query-from>1</Hsp_query-from> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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40 <Hsp_query-to>420</Hsp_query-to> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
parents:
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41 <Hsp_hit-from>1</Hsp_hit-from> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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42 <Hsp_hit-to>420</Hsp_hit-to> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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43 <Hsp_query-frame>0</Hsp_query-frame> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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44 <Hsp_hit-frame>0</Hsp_hit-frame> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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45 <Hsp_identity>417</Hsp_identity> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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46 <Hsp_positive>418</Hsp_positive> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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47 <Hsp_gaps>0</Hsp_gaps> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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48 <Hsp_align-len>226</Hsp_align-len> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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49 <Hsp_qseq>MASELTYRRHEMEQAEGRALYRKPMKPIRYMLREQRLVFVLVGIAIATFAFTLFSPSSTTQPIPISYYSDPEMRSYMSGGIGSVGGKIPLGLKRKGLRVVVTXXXXXXXXXLVDRLMARGDKVIVVDNFFTGSKENVMHHFGNPNFELIRHDVVEPILLEVDHIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQLET</Hsp_qseq> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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50 <Hsp_hseq>MASELTYRRHEMEQAEGRALYRKPMKPIRYMLREQRLVFVLVGIAIATLAFTLFSPSSTTQPIPISYYSDPEMRSYMSGGMGSVGGKIPLGLKRKGLRVVVTXXXXXXXXXLVDRLMARGDKVIVVDNFFTGSKENVMHHFGNPNFELIRHDVVEPILLEVDHIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQLET</Hsp_hseq> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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51 <Hsp_midline>MASELTYRRHEMEQAEGRALYRKPMKPIRYMLREQRLVFVLVGIAIAT AFTLFSPSSTTQPIPISYYSDPEMRSYMSGG+GSVGGKIPLGLKRKGLRVVVTXXXXXXXXXLVDRLMARGDKVIVVDNFFTGSKENVMHHFGNPNFELIRHDVVEPILLEVDHIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQLET</Hsp_midline> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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52 </Hsp> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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53 </Hit_hsps> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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54 </Hit> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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55 </Iteration_hits> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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56 <Iteration_stat> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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57 <Statistics> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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58 <Statistics_db-num>405733372</Statistics_db-num> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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59 <Statistics_db-len>147630876712</Statistics_db-len> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
gga
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60 <Statistics_hsp-len>0</Statistics_hsp-len> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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61 <Statistics_eff-space>0</Statistics_eff-space> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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62 <Statistics_kappa>0.041000</Statistics_kappa> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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63 <Statistics_lambda>0.267000</Statistics_lambda> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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64 <Statistics_entropy>0</Statistics_entropy> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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65 </Statistics> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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66 </Iteration_stat> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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67 </Iteration> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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68 </BlastOutput_iterations> |
f415e44e71de
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
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69 </BlastOutput> |