Mercurial > repos > gga > genenotebook_genenotebook_build

annotate README.md @ 3:1d59e907fa98 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 583e362682bf461f9701f7dc4986a428a67ca47a
author gga
date Wed, 20 Sep 2023 16:48:06 +0000
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22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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1 # GeneNoteBook Galaxy tool
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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3 This tool will generate a MongoDB database ready to be used by a GeneNoteBook server.
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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5 To achieve this, this tools starts a local MongoDB server, listening only on a UNIX socket within the job directory.
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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7 It also starts a GeneNoteBook server within the job evironment, using a port >7000, that is detected to be free at the time of running the job.