Mercurial > repos > gga > genenotebook_genenotebook_build

annotate README.md @ 5:bd94e502872a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit bd0a923142aeba63c9314632659a3095dfbedfa8
author gga
date Tue, 24 Oct 2023 09:09:41 +0000
parents 22f22c3e81bf
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
1 # GeneNoteBook Galaxy tool
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
2
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
3 This tool will generate a MongoDB database ready to be used by a GeneNoteBook server.
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
4
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
5 To achieve this, this tools starts a local MongoDB server, listening only on a UNIX socket within the job directory.
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
6
22f22c3e81bf planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff changeset
7 It also starts a GeneNoteBook server within the job evironment, using a port >7000, that is detected to be free at the time of running the job.