Mercurial > repos > gga > genenotebook_genenotebook_build
annotate test-data/eggnog.tsv @ 11:4398a6fea625 draft default tip
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 6b276b84437470f019a6b13a7bd17171c117cece
author | gga |
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date | Mon, 01 Jul 2024 08:44:45 +0000 |
parents | 22f22c3e81bf |
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22f22c3e81bf
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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1 # emapper version: emapper-2.0.1 emapper DB: 2.0 |
22f22c3e81bf
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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2 # command: ./emapper.py --data_dir /shared/ifbstor1/galaxy/mutable-data/tool-data/eggnog_data/2.0 -m diamond --matrix BLOSUM62 --gapopen 11 --gapextend 1 --query-cover 0 --subject-cover 0 --target_orthologs=all --go_evidence=non-electronic --seed_ortholog_evalue=0.001 --seed_ortholog_score=60 --output=results -i /shared/ifbstor1/galaxy/datasets/002/201/dataset_2201165.dat --cpu 8 |
22f22c3e81bf
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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3 # time: Tue Nov 23 17:29:53 2021 |
22f22c3e81bf
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
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4 #query_name seed_eggNOG_ortholog seed_ortholog_evalue seed_ortholog_score best_tax_level Preferred_name GOs EC KEGG_ko KEGG_Pathway KEGG_Module KEGG_Reaction KEGG_rclass BRITE KEGG_TC CAZy BiGG_Reaction taxonomic scope eggNOG OGs best eggNOG OG COG Functional cat. eggNOG free text desc. |
22f22c3e81bf
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
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5 MMUCEDO_000002-T1 36080.S2J5L3 1.23e-186 523.0 Fungi incertae sedis ABP140 GO:0001510,GO:0003674,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005884,GO:0005937,GO:0005938,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007015,GO:0008033,GO:0008092,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0015629,GO:0016043,GO:0016070,GO:0016427,GO:0016740,GO:0016741,GO:0022607,GO:0030029,GO:0030036,GO:0030427,GO:0030479,GO:0030488,GO:0030674,GO:0030863,GO:0030864,GO:0032259,GO:0032432,GO:0034470,GO:0034641,GO:0034660,GO:0042995,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043332,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0044877,GO:0046483,GO:0051015,GO:0051017,GO:0051286,GO:0052735,GO:0060090,GO:0061572,GO:0061645,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120038,GO:0140098,GO:0140101,GO:1901360 2.1.1.268 ko:K17053 ko00000,ko01000,ko03016 Fungi 1GSMQ@112252,38G2U@33154,3NUGD@4751,KOG2361@1,KOG2361@2759 NA|NA|NA S Methyltransferase domain |
22f22c3e81bf
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff
changeset
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6 MMUCEDO_000003-T1 36080.S2J001 0.0 948.0 Fungi Fungi 39PS9@33154,3Q616@4751,KOG3577@1,KOG3577@2759 NA|NA|NA T 7 transmembrane receptor (Secretin family) |
22f22c3e81bf
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff
changeset
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7 MMUCEDO_000004-T1 36080.S2J485 7.4e-114 328.0 Fungi incertae sedis RPS9B GO:0000462,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006450,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016070,GO:0016072,GO:0019222,GO:0019538,GO:0019843,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032040,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112 ko:K02997 ko03010,map03010 M00177 br01610,ko00000,ko00001,ko00002,ko03011 Fungi 1GT32@112252,38B77@33154,3NU1W@4751,COG0522@1,KOG3301@2759 NA|NA|NA J Ribosomal protein S4/S9 N-terminal domain |
22f22c3e81bf
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 12282c16658b37858f49944796fd95515ef0fc0b
gga
parents:
diff
changeset
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8 MMUCEDO_000005-T1 36080.S2JYJ1 6.56e-107 308.0 Fungi incertae sedis RPL21A GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904 ko:K02889 ko03010,map03010 M00177,M00179 br01610,ko00000,ko00001,ko00002,ko03011 Fungi 1GTD9@112252,39YIF@33154,3P285@4751,COG2139@1,KOG1732@2759 NA|NA|NA J Ribosomal protein L21e |