comparison macros.xml @ 8:29eeddd8ea62 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 1429f00733ee24bf2edf56b9fd7ff4ad2dec3f15

7:dfb2bc3aedbd

            <requirement type="package" version="@TOOL_VERSION@">genoboo</requirement>
            <yield/>
        </requirements>
    </xml>

    <token name="@TOOL_VERSION@">0.4.12</token>
    <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy0</token>

    <xml name="citation">
        <citations>
            <citation type="doi">10.1093/bioinformatics/btz491</citation>

    This runs GeneNoteBook, and a local mongodb server listening only on a unix socket, created in the work dir.
    The bind_ip option is a trick to prevent mongod from opening a TCP socket.
    For some unknwon reason, unixSocketPrefix needs an absolute path
    -->
    <token name="@START_GNB@"><![CDATA[
        export GNB_PORT="\$(bash '$__tool_directory__/find_free_port.sh')";
        export MONGO_URI="\$(pwd | sed 's|/|%2F|g')";
        #if $existing
            tar -xf '${existing}' mongo_db;
        #else
            mkdir ./mongo_db/;

8:29eeddd8ea62

            <requirement type="package" version="@TOOL_VERSION@">genoboo</requirement>
            <yield/>
        </requirements>
    </xml>

    <token name="@TOOL_VERSION@">0.4.13</token>
    <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy0</token>

    <xml name="citation">
        <citations>
            <citation type="doi">10.1093/bioinformatics/btz491</citation>

    This runs GeneNoteBook, and a local mongodb server listening only on a unix socket, created in the work dir.
    The bind_ip option is a trick to prevent mongod from opening a TCP socket.
    For some unknwon reason, unixSocketPrefix needs an absolute path
    -->
    <token name="@START_GNB@"><![CDATA[
        export MONGO_URI="\$(pwd | sed 's|/|%2F|g')";
        #if $existing
            tar -xf '${existing}' mongo_db;
        #else
            mkdir ./mongo_db/;