comparison launch_gnb.sh @ 10:a0358a5ab3ae draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 0bc8333885dc11b283291458fb9d4bbd2052f6e0

9:e98f93ba54cd

  sleep 3
done;

# Make sure that gnb is working, and that it's serving on the expected port
curl "http://127.0.0.1:${GNB_PORT}/healthcheck" > /dev/null
grep -q "Healthcheck OK" ./gnb.log

echo "GNB is ready"

10:a0358a5ab3ae

  sleep 3
done;

# Make sure that gnb is working, and that it's serving on the expected port
# Wait a bit for curl to work, just in case. Dump the logs if it does not

tries_curl=0

while ! curl -s "http://127.0.0.1:${GNB_PORT}/healthcheck"; do
  tries_curl=$((tries_curl + 1))
  if [ "$tries_curl" -ge 100 ]; then
    echo "Healthcheck is not working, stopping:" 1>&2;
    cat ./gnb.log 1>&2;
    kill $GNB_PID $(<"./mongo.pid");
    exit 1;
  fi

  sleep 3
done;

grep -q "Healthcheck OK" ./gnb.log

echo "GNB is ready"