comparison test-data/blast.xml @ 1:f415e44e71de draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
author gga
date Mon, 03 Apr 2023 15:01:52 +0000
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0:22f22c3e81bf 1:f415e44e71de
1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput>
4 <BlastOutput_program>blastp</BlastOutput_program>
5 <BlastOutput_version>diamond 2.0.13</BlastOutput_version>
6 <BlastOutput_reference>Benjamin Buchfink, Xie Chao, and Daniel Huson (2015), &quot;Fast and sensitive protein alignment using DIAMOND&quot;, Nature Methods 12:59-60.</BlastOutput_reference>
7 <BlastOutput_db>/db/nr/NR_2021-6-16/diamond/nr.dmnd</BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>MMUCEDO_000001-P1</BlastOutput_query-def>
10 <BlastOutput_query-len>420</BlastOutput_query-len>
11 <BlastOutput_param>
12 <Parameters>
13 <Parameters_matrix>blosum62</Parameters_matrix>
14 <Parameters_expect>1e-08</Parameters_expect>
15 <Parameters_gap-open>11</Parameters_gap-open>
16 <Parameters_gap-extend>1</Parameters_gap-extend>
17 <Parameters_filter>F</Parameters_filter>
18 </Parameters>
19 </BlastOutput_param>
20 <BlastOutput_iterations>
21 <Iteration>
22 <Iteration_iter-num>1</Iteration_iter-num>
23 <Iteration_query-ID>Query_1</Iteration_query-ID>
24 <Iteration_query-def>MMUCEDO_000001-P1</Iteration_query-def>
25 <Iteration_query-len>226</Iteration_query-len>
26 <Iteration_hits>
27 <Hit>
28 <Hit_num>1</Hit_num>
29 <Hit_id>KAG2309741.1</Hit_id>
30 <Hit_def>hypothetical protein Bca52824_029489 [Brassica carinata]</Hit_def>
31 <Hit_accession>KAG2309741</Hit_accession>
32 <Hit_len>226</Hit_len>
33 <Hit_hsps>
34 <Hsp>
35 <Hsp_num>1</Hsp_num>
36 <Hsp_bit-score>803</Hsp_bit-score>
37 <Hsp_score>2075</Hsp_score>
38 <Hsp_evalue>7.84e-293</Hsp_evalue>
39 <Hsp_query-from>1</Hsp_query-from>
40 <Hsp_query-to>420</Hsp_query-to>
41 <Hsp_hit-from>1</Hsp_hit-from>
42 <Hsp_hit-to>420</Hsp_hit-to>
43 <Hsp_query-frame>0</Hsp_query-frame>
44 <Hsp_hit-frame>0</Hsp_hit-frame>
45 <Hsp_identity>417</Hsp_identity>
46 <Hsp_positive>418</Hsp_positive>
47 <Hsp_gaps>0</Hsp_gaps>
48 <Hsp_align-len>226</Hsp_align-len>
49 <Hsp_qseq>MASELTYRRHEMEQAEGRALYRKPMKPIRYMLREQRLVFVLVGIAIATFAFTLFSPSSTTQPIPISYYSDPEMRSYMSGGIGSVGGKIPLGLKRKGLRVVVTXXXXXXXXXLVDRLMARGDKVIVVDNFFTGSKENVMHHFGNPNFELIRHDVVEPILLEVDHIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQLET</Hsp_qseq>
50 <Hsp_hseq>MASELTYRRHEMEQAEGRALYRKPMKPIRYMLREQRLVFVLVGIAIATLAFTLFSPSSTTQPIPISYYSDPEMRSYMSGGMGSVGGKIPLGLKRKGLRVVVTXXXXXXXXXLVDRLMARGDKVIVVDNFFTGSKENVMHHFGNPNFELIRHDVVEPILLEVDHIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQLET</Hsp_hseq>
51 <Hsp_midline>MASELTYRRHEMEQAEGRALYRKPMKPIRYMLREQRLVFVLVGIAIAT AFTLFSPSSTTQPIPISYYSDPEMRSYMSGG+GSVGGKIPLGLKRKGLRVVVTXXXXXXXXXLVDRLMARGDKVIVVDNFFTGSKENVMHHFGNPNFELIRHDVVEPILLEVDHIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQLET</Hsp_midline>
52 </Hsp>
53 </Hit_hsps>
54 </Hit>
55 </Iteration_hits>
56 <Iteration_stat>
57 <Statistics>
58 <Statistics_db-num>405733372</Statistics_db-num>
59 <Statistics_db-len>147630876712</Statistics_db-len>
60 <Statistics_hsp-len>0</Statistics_hsp-len>
61 <Statistics_eff-space>0</Statistics_eff-space>
62 <Statistics_kappa>0.041000</Statistics_kappa>
63 <Statistics_lambda>0.267000</Statistics_lambda>
64 <Statistics_entropy>0</Statistics_entropy>
65 </Statistics>
66 </Iteration_stat>
67 </Iteration>
68 </BlastOutput_iterations>
69 </BlastOutput>