Mercurial > repos > gga > genenotebook_genenotebook_build
diff launch_gnb.sh @ 1:f415e44e71de draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit a04f273adbc0ebb95bf42bf5bad8b41ba7aba91d
| author | gga |
|---|---|
| date | Mon, 03 Apr 2023 15:01:52 +0000 |
| parents | 22f22c3e81bf |
| children | 5a6050937cb9 |
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--- a/launch_gnb.sh Wed Jan 11 11:49:13 2023 +0000 +++ b/launch_gnb.sh Mon Apr 03 15:01:52 2023 +0000 @@ -4,10 +4,8 @@ mongod --dbpath ./mongo_db/ --unixSocketPrefix `pwd` --bind_ip fake_socket --logpath ./mongod.log --pidfilepath ./mongo.pid & -sleep 5 +sleep 8 -# "waiting for connections on port" is for mongodb 4x -#if ! grep -q "waiting for connections on port" ./mongod.log; then # "Listening on" is for mongodb 5x if ! grep -q "Listening on" ./mongod.log; then echo "Failed to launch MongoDB:" 1>&2; @@ -19,7 +17,7 @@ TMP_STORAGE=$(pwd)/tmp_storage mkdir "$TMP_STORAGE" -genenotebook run --storage-path "$TMP_STORAGE" --port ${GNB_PORT} --mongo-url mongodb://$MONGO_URI%2Fmongodb-27017.sock/genenotebook > ./gnb.log 2>&1 & +genoboo run --storage-path "$TMP_STORAGE" --port ${GNB_PORT} --mongo-url mongodb://$MONGO_URI%2Fmongodb-27017.sock/genenotebook > ./gnb.log 2>&1 & export GNB_PID=$!