Mercurial > repos > gga > genenotebook_genenotebook_build
changeset 10:a0358a5ab3ae draft default tip
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/genenotebook commit 0bc8333885dc11b283291458fb9d4bbd2052f6e0
| author | gga |
|---|---|
| date | Mon, 24 Jun 2024 10:28:36 +0000 |
| parents | e98f93ba54cd |
| children | |
| files | launch_gnb.sh macros.xml |
| diffstat | 2 files changed, 17 insertions(+), 2 deletions(-) [+] |
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--- a/launch_gnb.sh Mon Apr 08 09:41:33 2024 +0000 +++ b/launch_gnb.sh Mon Jun 24 10:28:36 2024 +0000 @@ -60,7 +60,22 @@ done; # Make sure that gnb is working, and that it's serving on the expected port -curl "http://127.0.0.1:${GNB_PORT}/healthcheck" > /dev/null +# Wait a bit for curl to work, just in case. Dump the logs if it does not + +tries_curl=0 + +while ! curl -s "http://127.0.0.1:${GNB_PORT}/healthcheck"; do + tries_curl=$((tries_curl + 1)) + if [ "$tries_curl" -ge 100 ]; then + echo "Healthcheck is not working, stopping:" 1>&2; + cat ./gnb.log 1>&2; + kill $GNB_PID $(<"./mongo.pid"); + exit 1; + fi + + sleep 3 +done; + grep -q "Healthcheck OK" ./gnb.log echo "GNB is ready"
--- a/macros.xml Mon Apr 08 09:41:33 2024 +0000 +++ b/macros.xml Mon Jun 24 10:28:36 2024 +0000 @@ -7,7 +7,7 @@ </requirements> </xml> - <token name="@TOOL_VERSION@">0.4.15</token> + <token name="@TOOL_VERSION@">0.4.16</token> <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy0</token> <xml name="citation">