Mercurial > repos > gga > jbrowse_to_container
comparison jbrowse_to_container.py @ 0:11033bdad2ca draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/jbrowse commit f745b23c84a615bf434d717c8c0e553a012f0268
author | gga |
---|---|
date | Mon, 11 Sep 2017 05:49:16 -0400 |
parents | |
children | 4065bcff8e85 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:11033bdad2ca |
---|---|
1 #!/usr/bin/env python | |
2 from __future__ import print_function | |
3 | |
4 import argparse | |
5 import base64 | |
6 | |
7 | |
8 if __name__ == '__main__': | |
9 parser = argparse.ArgumentParser(description='Generates an iframe to access a jbrowse instance') | |
10 parser.add_argument('external_jbrowse_url', help='Jbrowse full URL') | |
11 | |
12 args = parser.parse_args() | |
13 | |
14 # This is base64 encoded to get past the toolshed's filters. | |
15 HTML_TPL = """ | |
16 PGh0bWw+PGhlYWQ+PHRpdGxlPkVtYmVkZGVkIEpCcm93c2UgQWNjZXNzPC90aXRsZT48c3R5bGUg | |
17 dHlwZT0idGV4dC9jc3MiPmJvZHkge3ttYXJnaW46IDA7fX0gaWZyYW1lIHt7Ym9yZGVyOiAwO3dp | |
18 ZHRoOiAxMDAlO2hlaWdodDogMTAwJX19PC9zdHlsZT48L2hlYWQ+PGJvZHk+PGlmcmFtZSBzcmM9 | |
19 IntiYXNlX3VybH0iPjwvaWZyYW1lPjwvYm9keT48L2h0bWw+DQo= | |
20 """ | |
21 HTML_TPL = base64.b64decode(HTML_TPL.replace('\n', '')) | |
22 | |
23 print(HTML_TPL.format(base_url=args.external_jbrowse_url)) |