diff analysis_load_go.xml @ 0:81f5e6980725 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/analysis_load_go.xml	Mon Sep 11 05:51:44 2017 -0400
@@ -0,0 +1,78 @@
+<?xml version="1.0"?>
+<tool id="analysis_load_go" profile="16.04" name="Load Blast2GO results" version="@WRAPPER_VERSION@.0">
+    <description>into Tripal</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
+    <command><![CDATA[
+        tmp_dir=`mktemp -d -p "@DATA_DIR@"` && chmod a+rx "\${tmp_dir}"
+
+        &&
+
+        cp '${input}' "\${tmp_dir}/blast2go.gaf"
+
+        &&
+
+        @AUTH@
+
+        tripaille analysis load_go
+
+            @ANALYSIS@
+
+            @MATCHING@
+
+            "\${tmp_dir}/blast2go.gaf"
+
+        &&
+
+        echo "Data loaded" > $results
+    ]]></command>
+    <inputs>
+        <param name="input"
+               type="data"
+               format="txt"
+               label="Blast2Go results (GAF file)" />
+
+        <expand macro="matching"/>
+        <expand macro="analysis" />
+    </inputs>
+    <outputs>
+        <data format="txt" name="results" label="Load Blast2GO results into Tripal" />
+    </outputs>
+    <tests>
+        <test expect_failure="true" expect_exit_code="1">
+            <param name="input" value="blast2go.gaf" />
+            <param name="query_type" value="polypeptide" />
+            <param name="query_uniquename" value="true" />
+            <section name="analysis">
+                <param name="name" value="Some analysis" />
+                <param name="program" value="interproscan" />
+                <param name="program_version" value="58.2" />
+                <param name="algorithm" value="blast2go" />
+                <param name="source" value="NCBI" />
+                <param name="source_version" value="1.0" />
+                <param name="source_uri" value="http://ncbi.com/somewhere" />
+                <param name="description" value="My cool new test analysis" />
+                <param name="date" value="2016-12-12" />
+            </section>
+
+            <expand macro="test_result" />
+        </test>
+    </tests>
+    <help><![CDATA[
+        @HELP_OVERVIEW@
+
+        **Load Blast2Go results**
+
+        With this tool, you can load Blast2go results into the Tripal/Chado database.
+
+        A corresponding analysis will be created, keep in mind that you cannot add multiple analysis with the same program, program version and source.
+
+        The `tripal_analysis_go <http://github.com/tripal/tripal_analysis_go>`_ module must be installed and configured on the Tripal instance.
+
+        @HELP@
+    ]]></help>
+    <expand macro="citation"/>
+</tool>