comparison db_index.xml @ 6:468955e12255 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857

5:1d109af32d7c

<?xml version="1.0"?>
<tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.1">
    <description>using Elasticsearch</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>

                --index_url '${expose.index_url}'
            #end if

        &&

        echo "Data loaded" > $results
    ]]></command>
    <inputs>
        <conditional name="table">
            <param name="mode"
                   type="select"
                   label="Data to index">
                <option value="website" selected="true">Index all the Tripal content</option>
                <option value="table">Index a specific table</option>
                <option value="nodes">Index all website nodes</option>
                <option value="entities">Index all website entities (Tripal 3 only)</option>
            </param>
            <when value="website"/>

            <option value="path_hierarchy">path_hierarchy</option>
        </param>
        <param name="queues" label="Queues" argument="queues" type="integer" value="10" help="Number of indexing task queues" />
        <conditional name="expose">
            <param name="do_expose" type="select" label="Expose the index to other websites (read-only)">
                <option value="yes" selected="true">No</option>
                <option value="no">No</option>
            </param>
            <when value="no"/>
            <when value="yes">
                <param name="index_url" label="Index Url" argument="--index_url" type="text" help="In order for other sites to link back to your results page, you must specify a path where the form for this index can be reached" />

6:468955e12255

<?xml version="1.0"?>
<tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.0">
    <description>using Elasticsearch</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>

                --index_url '${expose.index_url}'
            #end if

        &&

        echo "Data loaded" > '$results'
    ]]></command>
    <inputs>
        <conditional name="table">
            <param name="mode"
                   argument="--mode"
                   type="select"
                   label="Data to index">
                <option value="website" selected="true">Index all the Tripal content</option>
                <option value="gene">Index all the genes</option>
                <option value="table">Index a specific table</option>
                <option value="nodes">Index all website nodes</option>
                <option value="entities">Index all website entities (Tripal 3 only)</option>
            </param>
            <when value="website"/>

            <option value="path_hierarchy">path_hierarchy</option>
        </param>
        <param name="queues" label="Queues" argument="queues" type="integer" value="10" help="Number of indexing task queues" />
        <conditional name="expose">
            <param name="do_expose" type="select" label="Expose the index to other websites (read-only)">
                <option value="yes" selected="true">Yes</option>
                <option value="no">No</option>
            </param>
            <when value="no"/>
            <when value="yes">
                <param name="index_url" label="Index Url" argument="--index_url" type="text" help="In order for other sites to link back to your results page, you must specify a path where the form for this index can be reached" />