# HG changeset patch
# User gga
# Date 1551781288 18000
# Node ID 468955e12255f9cf0a4adfe122bed78980e73d92
# Parent  1d109af32d7cca183b73b0c739a3235a9b2896ef
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857

diff -r 1d109af32d7c -r 468955e12255 db_index.xml
--- a/db_index.xml	Mon Feb 25 06:27:28 2019 -0500
+++ b/db_index.xml	Tue Mar 05 05:21:28 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.1">
+<tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.0">
     <description>using Elasticsearch</description>
     <macros>
         <import>macros.xml</import>
@@ -45,14 +45,16 @@
 
         &&
 
-        echo "Data loaded" > $results
+        echo "Data loaded" > '$results'
     ]]></command>
     <inputs>
         <conditional name="table">
             <param name="mode"
+                   argument="--mode"
                    type="select"
                    label="Data to index">
                 <option value="website" selected="true">Index all the Tripal content</option>
+                <option value="gene">Index all the genes</option>
                 <option value="table">Index a specific table</option>
                 <option value="nodes">Index all website nodes</option>
                 <option value="entities">Index all website entities (Tripal 3 only)</option>
@@ -121,7 +123,7 @@
         <param name="queues" label="Queues" argument="queues" type="integer" value="10" help="Number of indexing task queues" />
         <conditional name="expose">
             <param name="do_expose" type="select" label="Expose the index to other websites (read-only)">
-                <option value="yes" selected="true">No</option>
+                <option value="yes" selected="true">Yes</option>
                 <option value="no">No</option>
             </param>
             <when value="no"/>
diff -r 1d109af32d7c -r 468955e12255 macros.xml
--- a/macros.xml	Mon Feb 25 06:27:28 2019 -0500
+++ b/macros.xml	Tue Mar 05 05:21:28 2019 -0500
@@ -2,7 +2,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.2">python-tripal</requirement>
+            <requirement type="package" version="3.2.1">python-tripal</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -15,7 +15,7 @@
         </stdio>
     </xml>
 
-    <token name="@WRAPPER_VERSION@">3.2</token>
+    <token name="@WRAPPER_VERSION@">3.2.1</token>
 
     <xml name="citation">
         <citations>