Mercurial > repos > gga > tripal_expression_add_biomaterial
diff expression_add_biomaterial.xml @ 0:11ec43bed5ea draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a
author | gga |
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date | Mon, 25 Feb 2019 06:26:58 -0500 |
parents | |
children | 4843796fcbf6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/expression_add_biomaterial.xml Mon Feb 25 06:26:58 2019 -0500 @@ -0,0 +1,42 @@ +<?xml version="1.0"?> +<tool id="expression_add_biomaterial" name="Create a biomaterial" version="@WRAPPER_VERSION@.0"> + <description>in Tripal</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <code file="tripal.py"/> + <command detect_errors="aggressive"><![CDATA[ +tmp_dir=`mktemp -d -p "@DATA_DIR@"` && chmod a+rx "\${tmp_dir}" + +&& + +cp '${file_path}' "\${tmp_dir}/biomaterial_input" + +&& + +@AUTH@ + +tripaille expression add_biomaterial +'$organism_id' +"\${tmp_dir}/biomaterial_input" +'$file_path.extension' + +&& + +echo "Data loaded" > $results +]]></command> + <inputs> + <!-- arguments --> + <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" /> + <param name="file_path" label="Biomaterial description sheet" argument="file_path" type="data" format="xml,tsv,csv" help="A file describing the biomaterial" /> + </inputs> + <outputs> + <data format="txt" name="results"/> + </outputs> + <help> +Add a new biomaterial to the database + +@HELP@ + </help> +</tool>