comparison organism_add_organism.xml @ 4:2d707e97598b draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit d9f27b297d9a919471c92b02ecf6cc9554457211

3:92407294b12e

<?xml version="1.0"?>
<tool id="organism_add_organism" profile="16.04" name="Create an organism" version="@WRAPPER_VERSION@.0">
    <description>in Tripal</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">

            #if $infra.use_infra:
                --infraspecific_rank '$infra.rank'
                --infraspecific_name '$infra.name'
            #end if

            '$genus'
            '$species'
            '$common'
            '$abbr'

            | jq -S . > $results
    ]]></command>
    <inputs>
        <param name="genus"

            <param name="genus" value="Testus" />
            <param name="species" value="testum" />
            <param name="abbr" value="test" />
            <param name="common" value="test stuff" />
            <param name="common" value="My cool new test organism" />

            <expand macro="test_result" />
        </test>
        <test expect_failure="true">
            <param name="genus" value="Testus" />
            <param name="species" value="testum" />

            <conditional name="infra">
                <param name="use_infra" value="True" />
                <param name="rank" value="subspecies" />
                <param name="name" value="strain3" />
            </conditional>

            <expand macro="test_result" />
        </test>
    </tests>
    <help><![CDATA[
        @HELP_OVERVIEW@

4:2d707e97598b

<?xml version="1.0"?>
<tool id="organism_add_organism" profile="16.04" name="Create an organism" version="@WRAPPER_VERSION@.1">
    <description>in Tripal</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">

            #if $infra.use_infra:
                --infraspecific_rank '$infra.rank'
                --infraspecific_name '$infra.name'
            #end if

            --common '$common'
            --abbr '$abbr'
            '$genus'
            '$species'

            | jq -S . > $results
    ]]></command>
    <inputs>
        <param name="genus"

            <param name="genus" value="Testus" />
            <param name="species" value="testum" />
            <param name="abbr" value="test" />
            <param name="common" value="test stuff" />
            <param name="common" value="My cool new test organism" />
            <expand macro="test_result" />
        </test>
        <test expect_failure="true">
            <param name="genus" value="Testus" />
            <param name="species" value="testum" />

            <conditional name="infra">
                <param name="use_infra" value="True" />
                <param name="rank" value="subspecies" />
                <param name="name" value="strain3" />
            </conditional>
            <expand macro="test_result" />
        </test>
    </tests>
    <help><![CDATA[
        @HELP_OVERVIEW@