annotate phylogeny_sync.xml @ 1:159fd092ca62 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 869e5fd8535deca8325777efcd31c70a514b582a

<?xml version="1.0"?>
<tool id="phylogeny_sync" profile="16.04" name="Synchronize phylogeny data" version="@WRAPPER_VERSION@.1">
    <description>from Chado to Tripal</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <code file="tripal.py"/>
    <expand macro="stdio"/>
    <command><![CDATA[

        @AUTH@

        tripaille phylogeny sync

        &&

        echo "Data loaded" > $results
    ]]></command>
    <inputs>
       <expand macro="wait_for"/>
    </inputs>
    <outputs>
        <data format="json" name="results" label="Synchronize Phylogeny into Tripal" />
    </outputs>
    <tests>
        <test expect_failure="true">
            <expand macro="test_result" />
        </test>
    </tests>
    <help><![CDATA[
        @HELP_OVERVIEW@

        **Synchronize Phylogeny**

        With this tool, you can synchronize phylogeny data from the Chado database into the Tripal instance.
        Corresponding Drupal nodes will be created.

        @HELP@
    ]]></help>
    <expand macro="citation"/>
</tool>