Mercurial > repos > gianmarco_piccinno > project_rm

diff CodonSwitchTool/run_codon_switch.sh @ 41:bd35b13fabfb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author gianmarco_piccinno
date Mon, 20 May 2019 16:33:36 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CodonSwitchTool/run_codon_switch.sh	Mon May 20 16:33:36 2019 -0400
@@ -0,0 +1,2 @@
+#python setup.py build_ext --inplace
+python codon_switch.py -i pEPSA5_annotated.gb -l genbank -p patterns.txt -g S_aureus_JE2.gbf -q genbank -c Bacterial -f 3 -m 27 -d demonstration -o ./output # -d demonstration