comparison armdb_mirgene.py @ 9:43cecced90f5 draft

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author glogobyte
date Wed, 20 Oct 2021 15:17:00 +0000
parents 41f5a0616dbb
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8:6f0fa933b3ed 9:43cecced90f5
5 from multiprocessing import Process, Queue 5 from multiprocessing import Process, Queue
6 6
7 #--------------------------------------------Arguments----------------------------------------------- 7 #--------------------------------------------Arguments-----------------------------------------------
8 subprocess.call(['mkdir', 'out']) 8 subprocess.call(['mkdir', 'out'])
9 parser = argparse.ArgumentParser() 9 parser = argparse.ArgumentParser()
10 parser.add_argument("-pos", "--positions", help="", action="store") 10 parser.add_argument("-pos", "--positions", help="number of additional nucleotides", action="store")
11 parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store") 11 parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store")
12 parser.add_argument("-sym", "--symbol", help="",action="store") 12 parser.add_argument("-sym", "--symbol", help="organism symbol",action="store")
13 args = parser.parse_args() 13 args = parser.parse_args()
14 14
15 #------------------------------------Read Fasta files from MirGene----------------------------------- 15 #------------------------------------Read Fasta files from MirGene-----------------------------------
16 16
17 def read_url(path): 17 def read_url(path):