Mercurial > repos > glogobyte > armdb
comparison armdb_mirgene.py @ 9:43cecced90f5 draft
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author | glogobyte |
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date | Wed, 20 Oct 2021 15:17:00 +0000 |
parents | 41f5a0616dbb |
children |
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8:6f0fa933b3ed | 9:43cecced90f5 |
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5 from multiprocessing import Process, Queue | 5 from multiprocessing import Process, Queue |
6 | 6 |
7 #--------------------------------------------Arguments----------------------------------------------- | 7 #--------------------------------------------Arguments----------------------------------------------- |
8 subprocess.call(['mkdir', 'out']) | 8 subprocess.call(['mkdir', 'out']) |
9 parser = argparse.ArgumentParser() | 9 parser = argparse.ArgumentParser() |
10 parser.add_argument("-pos", "--positions", help="", action="store") | 10 parser.add_argument("-pos", "--positions", help="number of additional nucleotides", action="store") |
11 parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store") | 11 parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store") |
12 parser.add_argument("-sym", "--symbol", help="",action="store") | 12 parser.add_argument("-sym", "--symbol", help="organism symbol",action="store") |
13 args = parser.parse_args() | 13 args = parser.parse_args() |
14 | 14 |
15 #------------------------------------Read Fasta files from MirGene----------------------------------- | 15 #------------------------------------Read Fasta files from MirGene----------------------------------- |
16 | 16 |
17 def read_url(path): | 17 def read_url(path): |