comparison armdb_mirbase.py @ 8:6f0fa933b3ed draft

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7:40c50594116c

import time
import urllib.request
from multiprocessing import Process, Queue
import itertools



#---------------------------------Arguments------------------------------------------

subprocess.call(['mkdir', 'out'])
parser = argparse.ArgumentParser()

parser.add_argument("-pos", "--positions", help="", action="store")
parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store")
parser.add_argument("-gen", "--genome", help="tool directory path", action="store")
parser.add_argument("-gff3", "--gff", help="",action="store")
args = parser.parse_args()

#-----------------------Download and read of the gff3 file---------------------------------

def read_url(q):

8:6f0fa933b3ed

import time
import urllib.request
from multiprocessing import Process, Queue
import itertools

#---------------------------------Arguments------------------------------------------

subprocess.call(['mkdir', 'out'])
parser = argparse.ArgumentParser()

parser.add_argument("-pos", "--positions", help="number of additional nucleotides", action="store")
parser.add_argument("-tool_dir", "--tool_directory", help="tool directory path", action="store")
parser.add_argument("-gen", "--genome", help="genome version", action="store")
parser.add_argument("-gff3", "--gff", help="gff file",action="store")
args = parser.parse_args()

#-----------------------Download and read of the gff3 file---------------------------------

def read_url(q):