Mercurial > repos > glogobyte > isoread
comparison mirgene.py @ 30:d119424f67b6 draft
Uploaded
| author | glogobyte |
|---|---|
| date | Wed, 20 Oct 2021 16:24:32 +0000 |
| parents | 537dcf5b0133 |
| children | 23a88a3ec37d |
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| 29:0e7bd3f72c2c | 30:d119424f67b6 |
|---|---|
| 204 control_group=list(con_list) | 204 control_group=list(con_list) |
| 205 treated_group=list(tre_list) | 205 treated_group=list(tre_list) |
| 206 | 206 |
| 207 # Filters low count mirnas (otpional) | 207 # Filters low count mirnas (otpional) |
| 208 if int(args.per)!=-1: | 208 if int(args.per)!=-1: |
| 209 | 209 if int(args.per)>0 and float(args.per)<=100 and int(args.count)>0: |
| 210 fil_con_group=manager.list() | 210 fil_con_group=manager.list() |
| 211 fil_tre_group=manager.list() | 211 fil_tre_group=manager.list() |
| 212 | 212 |
| 213 ps_low_counts = Process(target=filter_low_counts,args=(control_group,treated_group,fil_con_group,fil_tre_group,args.per,args.count)) | 213 ps_low_counts = Process(target=filter_low_counts,args=(control_group,treated_group,fil_con_group,fil_tre_group,args.per,args.count)) |
| 214 ps_low_counts.start() | 214 ps_low_counts.start() |
| 215 ps_low_counts.join() | 215 ps_low_counts.join() |
| 216 | 216 |
| 217 fil_con_group=list(fil_con_group) | 217 fil_con_group=list(fil_con_group) |
| 218 fil_tre_group=list(fil_tre_group) | 218 fil_tre_group=list(fil_tre_group) |
| 219 | |
| 220 else: | |
| 221 sys.exit("Not acceptable values for filter") | |
| 219 | 222 |
| 220 if "fil_con_group" not in locals() or "fil_con_group" not in globals(): | 223 if "fil_con_group" not in locals() or "fil_con_group" not in globals(): |
| 221 fil_con_group=control_group | 224 fil_con_group=control_group |
| 222 fil_tre_group=treated_group | 225 fil_tre_group=treated_group |
| 223 | 226 |
| 377 n_control_group=list(n_con_list) | 380 n_control_group=list(n_con_list) |
| 378 n_treated_group=list(n_tre_list) | 381 n_treated_group=list(n_tre_list) |
| 379 | 382 |
| 380 # Filters low count mirnas (otpional) | 383 # Filters low count mirnas (otpional) |
| 381 if int(args.per)!=-1: | 384 if int(args.per)!=-1: |
| 382 | 385 if int(args.per)>0 and float(args.per)<=100 and int(args.count)>0: |
| 383 n_fil_con_group=manager.list() | 386 |
| 384 n_fil_tre_group=manager.list() | 387 n_fil_con_group=manager.list() |
| 385 | 388 n_fil_tre_group=manager.list() |
| 386 ps_low_counts = Process(target=filter_low_counts,args=(n_control_group,n_treated_group,n_fil_con_group,n_fil_tre_group,args.per,args.count)) | 389 |
| 387 ps_low_counts.start() | 390 ps_low_counts = Process(target=filter_low_counts,args=(n_control_group,n_treated_group,n_fil_con_group,n_fil_tre_group,args.per,args.count)) |
| 388 ps_low_counts.join() | 391 ps_low_counts.start() |
| 389 | 392 ps_low_counts.join() |
| 390 n_fil_con_group=list(n_fil_con_group) | 393 |
| 391 n_fil_tre_group=list(n_fil_tre_group) | 394 n_fil_con_group=list(n_fil_con_group) |
| 395 n_fil_tre_group=list(n_fil_tre_group) | |
| 396 else: | |
| 397 sys.exit("Not acceptable values for filter") | |
| 392 | 398 |
| 393 if "n_fil_con_group" not in locals() or "n_fil_con_group"not in globals(): | 399 if "n_fil_con_group" not in locals() or "n_fil_con_group"not in globals(): |
| 394 n_fil_con_group=n_control_group | 400 n_fil_con_group=n_control_group |
| 395 n_fil_tre_group=n_treated_group | 401 n_fil_tre_group=n_treated_group |
| 396 | 402 |