Mercurial > repos > goeckslab > bayestme_bleed_correct_with_plotting

comparison macros.xml @ 1:49d1547c78f4 draft

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planemo upload for repository https://github.com/goeckslab/tools-st/tree/main/tools/bayesTME commit 74a061cf2642805f54441c2c34f7a0ec74b7ec35
author goeckslab
date Wed, 10 Dec 2025 20:08:08 +0000
parents 3379665340fc
children 5be337aaf667
comparison
equal deleted inserted replaced
0:3379665340fc 1:49d1547c78f4
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">0.0.1</token> 2 <token name="@TOOL_VERSION@">0.0.1</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">1</token>
4 <token name="@PROFILE@">22.01</token> 4 <token name="@PROFILE@">22.01</token>
5 5
6 <xml name="bayestme_requirements"> 6 <xml name="bayestme_requirements">
7 <requirements> 7 <requirements>
8 <container type="docker">jeffquinnmsk/bayestme:0a7cde6acac2ffc34e8ad00b7fab75f869d80de2</container> 8 <container type="docker">jeffquinnmsk/bayestme:0a7cde6acac2ffc34e8ad00b7fab75f869d80de2</container>
15 </citations> 15 </citations>
16 </xml> 16 </xml>
17 17
18 <xml name="filter_genes_options" > 18 <xml name="filter_genes_options" >
19 19
20 <param argument="--n-top-by-standard-deviation" type="integer" optional="false" label="Use the top N genes with the highest spatial variance"/> 20 <param argument="--n-top-by-standard-deviation" type="integer" value = "1000" optional="false" label="Use the top N genes with the highest spatial variance"/>
21 21
22 <!-- Additional filtering options --> 22 <!-- Additional filtering options -->
23 <section name="additional_filtering_options" title="Additional Filtering Parameters" expanded="false"> 23 <section name="additional_filtering_options" title="Additional Filtering Parameters" expanded="false">
24 <param argument="--spot-threshold" optional="true" type="float" label="Filter genes appearing in greater than the provided threshold of tissue spots"/> 24 <param argument="--spot-threshold" optional="true" type="float" label="Filter genes appearing in greater than the provided threshold of tissue spots"/>
25 <param argument="--filter-ribosomal-genes" type="boolean" checked="false" label="Filter ribosomal genes (based on gene name regex)"/> 25 <param argument="--filter-ribosomal-genes" type="boolean" checked="false" label="Filter ribosomal genes (based on gene name regex)"/>