annotate test-data/celesta_prior.csv @ 2:41aaffbb9473 draft

planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/celesta commit ace07227a376d2684ec9afc37da91be789314635

,Lineage_level,CD31 - vasculature:Cyc_19_ch_3,CD34 - vasculature:Cyc_20_ch_3,Cytokeratin - epithelia:Cyc_10_ch_2,aSMA - smooth muscle:Cyc_11_ch_2,Podoplanin - lymphatics:Cyc_19_ch_4,CD45 - hematopoietic cells:Cyc_4_ch_2,CD15 - granulocytes:Cyc_14_ch_2,CD3 - T cells:Cyc_16_ch_4,CD20 - B cells:Cyc_8_ch_3,CD11c - DCs:Cyc_12_ch_3,CD163 - macrophages:Cyc_17_ch_3,CD68 - macrophages:Cyc_18_ch_4,CD38 - multifunctional:Cyc_20_ch_4,CD56 - NK cells:Cyc_10_ch_4,CD8 - cytotoxic T cells:Cyc_3_ch_2,CD4 - T helper cells:Cyc_6_ch_3,CD45RO - memory cells:Cyc_18_ch_3,FOXP3 - regulatory T cells:Cyc_2_ch_3
vasculature,1_0_1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
tumor cells,1_0_2,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
aSMA+ stroma,1_0_3,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0
lymphatics,1_0_4,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0
immune cells,1_0_5,0,0,0,0,0,1,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA
CD3+ T cells,2_5_6,0,0,0,0,0,NA,0,1,0,0,0,0,0,0,NA,NA,NA,NA
CD15+ granulocytes,2_5_7,0,0,0,0,0,NA,1,0,0,0,0,NA,0,0,0,0,NA,0
B cells,2_5_8,0,0,0,0,0,NA,0,0,1,0,0,0,0,0,0,0,0,0
CD11c+ DCs,2_5_9,0,0,0,0,0,NA,0,0,0,1,0,0,0,0,0,0,0,0
CD68+CD163+ macrophages,2_5_10,0,0,0,0,0,NA,0,0,0,0,1,1,0,0,0,0,NA,0
plasma cells,2_5_11,0,0,0,0,0,NA,0,0,0,0,0,0,1,0,0,0,0,0
NK cells,2_5_12,0,0,0,0,0,NA,0,NA,0,0,0,0,0,1,0,0,0,0
CD8+ T cells,3_6_13,0,0,0,0,0,NA,0,NA,0,0,0,0,0,0,1,0,NA,0
CD4+ T cells,3_6_14,0,0,0,0,0,NA,0,NA,0,0,0,0,0,0,0,1,NA,NA
CD4+ T cells CD45RO+,4_14_15,0,0,0,0,0,NA,0,NA,0,0,0,0,0,0,0,NA,1,0
Tregs,4_14_16,0,0,0,0,0,NA,0,NA,0,0,0,0,0,0,0,NA,0,1