diff macros.xml @ 1:44d4c885d9b5 draft

planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/celesta commit 1f02a762ab43a29aa7f59760798ff084f86e37db

--- a/macros.xml	Wed Aug 28 12:46:48 2024 +0000
+++ b/macros.xml	Thu Sep 12 16:49:51 2024 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">0.0.0.9</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">20.01</token>
 
     <xml name="celesta_requirements">
@@ -20,20 +20,4 @@
             <citation type="doi">10.1038/s41592-022-01498-z</citation>
         </citations>
     </xml>
-    <xml name="celesta_base_options" token_label="celesta_base_options">
-        <param name="x_coord" type="text" value="X_centroid" optional="false" label="Name of anndata.obs key containing cell or nucleus centroid X position" />
-        <param name="y_coord" type="text" value="Y_centroid" optional="false" label="Name of anndata.obs key containing cell or nucleus centroid Y position" />
-        <conditional name="filter_cells">
-            <param name="filter" type="select" label="Choose whether to filter cells" help="FilterCells">
-                <option value="no_filter" selected="true">Do not filter cells</option>
-                <option value="filter">Filter cells based on marker intensity</option>
-            </param>
-            <when value="no_filter">
-            </when>
-            <when value="filter">
-                <param name="low_threshold" type="float" value="0.4" optional="false" label="Set the low threshold for filtering cells" help="Cells below low threshold will be filtered out" />
-                <param name="high_threshold" type="float" value="0.9" optional="false" label="Set the high threshold for filtering cells" help="Cells above high threshold will be filtered out" />
-            </when>
-        </conditional>
-    </xml>
 </macros>