Mercurial > repos > goeckslab > celesta
changeset 2:41aaffbb9473 draft
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/celesta commit ace07227a376d2684ec9afc37da91be789314635
| author | goeckslab |
|---|---|
| date | Mon, 16 Sep 2024 18:51:31 +0000 |
| parents | 44d4c885d9b5 |
| children | 283636dbfba5 |
| files | celesta.xml macros.xml |
| diffstat | 2 files changed, 6 insertions(+), 12 deletions(-) [+] |
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--- a/celesta.xml Thu Sep 12 16:49:51 2024 +0000 +++ b/celesta.xml Mon Sep 16 18:51:31 2024 +0000 @@ -41,14 +41,14 @@ #if $runmode.options.high_thresholds_file: --highexpthresh '${runmode.options.high_thresholds_file}' #end if - #for $p in $plot_cells: + #for $p in $runmode.plot_cells: && Rscript '$__tool_directory__/celesta_plot_cells.R' --prior '$prior_info' --celltypes '${p.cell_types}' - --size '$p.test_size' - --height '$p.height' - --width '$p.width' - --dpi '$p.dpi' + --size '${p.test_size}' + --height '${p.height}' + --width '${p.width}' + --dpi '${p.dpi}' #end for #end if ]]> @@ -145,9 +145,6 @@ <has_h5_keys keys="obs/celesta_final_cell_type" /> </assert_contents> </output> - <assert_stdout> - <has_text text="vasculature 273" /> - </assert_stdout> </test> <test expect_num_outputs="3"> <param name="anndata" value="celesta_image.h5ad" /> @@ -174,9 +171,6 @@ <has_size value="1400000" delta="100000" /> </assert_contents> </output> - <assert_stdout> - <has_text text="vasculature 168" /> - </assert_stdout> </test> </tests> <help>
--- a/macros.xml Thu Sep 12 16:49:51 2024 +0000 +++ b/macros.xml Mon Sep 16 18:51:31 2024 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">0.0.0.9</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">20.01</token> <xml name="celesta_requirements">