# HG changeset patch
# User goeckslab
# Date 1709153536 0
# Node ID 7f93f472a242205ad380802155a242f7740f0ddc
# Parent  7a77ed0e579ab8a5209c07721b7dc29532b38b77
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mti-utils commit 130ef7e8ae6cab35866b72617e53d35acc11475a

diff -r 7a77ed0e579a -r 7f93f472a242 macros.xml
--- a/macros.xml	Wed Oct 05 20:38:54 2022 +0000
+++ b/macros.xml	Wed Feb 28 20:52:16 2024 +0000
@@ -11,10 +11,11 @@
     </xml>
     <xml name="citations">
         <citations>
+        <citation type="doi">10.1101/2022.08.18.504436</citation>
         </citations>
     </xml>
 
     <token name="@TOOL_VERSION@">0.0.1</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">3</token>
     <token name="@PROFILE@">19.01</token>
 </macros>
diff -r 7a77ed0e579a -r 7f93f472a242 process_intensities.xml
--- a/process_intensities.xml	Wed Oct 05 20:38:54 2022 +0000
+++ b/process_intensities.xml	Wed Feb 28 20:52:16 2024 +0000
@@ -1,8 +1,11 @@
 <tool id="cell_intensity_processing" name="Process single-cell intensities" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
-    <description>Options to correct for exposure time, autofluorescence subtraction, or compute signal-to-background ratio.</description>
+    <description></description>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <edam_operations>
+        <edam_operation>operation_3443</edam_operation>
+    </edam_operations>
     <expand macro="requirements" />
     <command detect_errors="aggressive"><![CDATA[
         
@@ -109,8 +112,7 @@
 3. Signal-to-background ratio - Divide single-cell mmean marker intensities by respective AF/bg channel mean intensity specified in channel metadata
 
 **Outputs**
-1. Feature observation matrix with processed intensities for all markers in channel metadata file. 
-   CellIDs, centroids, and morphological data remain unchanged.
+1. Feature observation matrix with processed intensities for all markers in channel metadata file. CellIDs, centroids, and morphological data remain unchanged.
     ]]></help>
     <expand macro="citations" />
-</tool>
\ No newline at end of file
+</tool>