comparison chat_analysis.xml @ 7:ea1c4179b2b9 draft

planemo upload for repository https://github.com/goeckslab/ChatAnalysis commit ca6d6493b0ebe9daa65de5ff5ea13b3e412c86c3

6:1ee654186809

<tool id="interactive_tool_chat_analysis" tool_type="interactive" name="Chat with your data" version="0.2.2">
    <icon src="datachat.png" />
    <description>Use natural language to work with and analyze your data</description>
    <requirements>
        <container type="docker">
            quay.io/goeckslab/chatanalysis:release
        </container>
    </requirements>
    <entry_points>
        <entry_point name="Chat with $input_dataset.element_identifier" requires_domain="True">
            <port>
                8501
            </port>
            <url>
                /
            </url>
        </entry_point>

    <command>
        <![CDATA[
        #import re
        echo "Starting Streamlit" &&
        echo "working dir now: `pwd`" &&
        mkdir -p generated_files &&
        #set $sanitized_input_dataset = re.sub('[^\w\-_\.]', '_', $input_dataset.element_identifier.strip())
        ln -sf '$input_dataset' "./${sanitized_input_dataset}";
        echo "sanitized input dataset: $sanitized_input_dataset" &&
        echo "input dataset: $input_dataset" &&
        echo "$input_dataset.ext" &&
        ln -sf $__tool_directory__/.env /ChatAnalysis/.env &&
        streamlit run /ChatAnalysis/Chat.py
            "$__user_email__"
            "$openai_api_key_file"
            "$groq_api_key_file"
            "$chat_history"
            "./generated_files"
            "$input_dataset"
            "$input_dataset.ext"
            --browser.gatherUsageStats false &&
        echo "Streamlit finished" &&
        echo "working dir now: '.' "

        ]]>
    </command>
    <configfiles>

7:ea1c4179b2b9

<tool id="interactive_tool_chat_analysis" tool_type="interactive" name="Chat with your data" version="0.3.0">
    <icon src="datachat.png" />
    <description>Use natural language to work with and analyze your data</description>
    <requirements>
        <container type="docker">
            quay.io/goeckslab/chatanalysis:0.3.0
        </container>
    </requirements>
    <entry_points>
        <entry_point name="Chat with $input_dataset.element_identifier" requires_domain="True">
            <port>
                9090
            </port>
            <url>
                /
            </url>
        </entry_point>

    <command>
        <![CDATA[
        #import re
        echo "Starting Streamlit" &&
        echo "working dir now: `pwd`" &&
        mkdir -p outputs_dir &&
        #set $sanitized_input_dataset = re.sub('[^\w\-_\.]', '_', $input_dataset.element_identifier.strip())
        ln -sf '$input_dataset' "./${sanitized_input_dataset}";
        echo "sanitized input dataset: $sanitized_input_dataset" &&
        echo "input dataset: $input_dataset" &&
        echo "$input_dataset.ext" &&
        ln -sf $__tool_directory__/.env /ChatAnalysis/.env &&
        python /ChatAnalysis/chat_dspy.py
            --user_id "$__user_email__"
            --openai_key_file "$openai_api_key_file"
            --groq_key_file "$groq_api_key_file"
            --chat_history "$chat_history"
            --outputs_dir "./outputs_dir"
            --input_file "$input_dataset"
            --input_type "$input_dataset.ext" &&
        echo "finished" &&
        echo "working dir now: '.' "

        ]]>
    </command>
    <configfiles>