Mercurial > repos > goeckslab > ludwig_evaluate
annotate ludwig_train.py @ 0:70a4d910f09a draft
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
| author | goeckslab | 
|---|---|
| date | Tue, 07 Jan 2025 22:46:16 +0000 | 
| parents | |
| children | 777be50bc321 | 
| rev | line source | 
|---|---|
| 
0
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
1 import logging | 
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70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
2 import pickle | 
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70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
3 import sys | 
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70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
4 | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
5 from ludwig.train import cli | 
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70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
6 | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
7 from ludwig_experiment import ( | 
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70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
8 convert_parquet_to_csv, | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
9 generate_html_report, | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
10 make_visualizations | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
11 ) | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
12 | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
13 from model_unpickler import SafeUnpickler | 
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70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
14 | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
15 | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
16 logging.basicConfig(level=logging.DEBUG) | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
17 | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
18 setattr(pickle, 'Unpickler', SafeUnpickler) | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
19 | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
20 cli(sys.argv[1:]) | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
21 | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
22 ludwig_output_directory_name = "experiment_run" | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
23 | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
24 make_visualizations(ludwig_output_directory_name) | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
25 convert_parquet_to_csv( | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
26 ludwig_output_directory_name | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
27 ) | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
28 title = "Ludwig Train" | 
| 
 
70a4d910f09a
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 
goeckslab 
parents:  
diff
changeset
 | 
29 generate_html_report(title, ludwig_output_directory_name) | 
