Mercurial > repos > goeckslab > ludwig_experiment
annotate ludwig_train.py @ 5:78b1e3921576 draft
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit 4dc221b2fa9717552787f0985ad3fc3df4460158
| author | goeckslab | 
|---|---|
| date | Sat, 21 Jun 2025 15:05:21 +0000 | 
| parents | 78e6686a218e | 
| children | 
| rev | line source | 
|---|---|
| 0 
78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 1 import logging | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 2 import pickle | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 3 import sys | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 4 | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 5 from ludwig.train import cli | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 6 from ludwig_experiment import ( | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 7 convert_parquet_to_csv, | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 8 generate_html_report, | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 9 make_visualizations | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 10 ) | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 11 from model_unpickler import SafeUnpickler | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 12 | 
| 
78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 13 | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 14 logging.basicConfig(level=logging.DEBUG) | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 15 | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 16 setattr(pickle, 'Unpickler', SafeUnpickler) | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 17 | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 18 cli(sys.argv[1:]) | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 19 | 
| 
78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 20 ludwig_output_directory_name = "experiment_run" | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 21 | 
| 
78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 22 make_visualizations(ludwig_output_directory_name) | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 23 convert_parquet_to_csv( | 
| 
78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 24 ludwig_output_directory_name | 
| 
78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 25 ) | 
| 
78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 26 title = "Ludwig Train" | 
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78e6686a218e
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
 goeckslab parents: diff
changeset | 27 generate_html_report(title, ludwig_output_directory_name) | 
