Mercurial > repos > goeckslab > ludwig_render_config
annotate ludwig_evaluate.py @ 0:ed8a9ea5bc73 draft
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
| author | goeckslab |
|---|---|
| date | Tue, 07 Jan 2025 22:45:58 +0000 |
| parents | |
| children | e3c63770083d |
| rev | line source |
|---|---|
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0
ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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1 import logging |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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2 import pickle |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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3 import sys |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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4 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
|
5 from ludwig.evaluate import cli |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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6 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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7 from ludwig_experiment import convert_parquet_to_csv, \ |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
|
8 generate_html_report, make_visualizations |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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9 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
|
10 from model_unpickler import SafeUnpickler |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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11 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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12 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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13 logging.basicConfig(level=logging.INFO) |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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14 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
|
15 setattr(pickle, 'Unpickler', SafeUnpickler) |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
|
16 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
|
17 cli(sys.argv[1:]) |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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18 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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19 ludwig_output_directory_name = "" |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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20 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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21 make_visualizations(ludwig_output_directory_name) |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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22 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
|
23 convert_parquet_to_csv( |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
|
24 ludwig_output_directory_name |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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25 ) |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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26 |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
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27 title = "Ludwig Evaluate" |
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ed8a9ea5bc73
planemo upload for repository https://github.com/goeckslab/Galaxy-Ludwig.git commit bdea9430787658783a51cc6c2ae951a01e455bb4
goeckslab
parents:
diff
changeset
|
28 generate_html_report(title, "") |
