diff Dockerfile @ 0:375c36923da1 draft default tip

planemo upload for repository https://github.com/goeckslab/gleam.git commit 1c6c1ad7a1b2bd3645aa0eafa2167784820b52e0

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Dockerfile	Tue Dec 09 23:49:47 2025 +0000
@@ -0,0 +1,89 @@
+FROM nvidia/cuda:11.8.0-cudnn8-runtime-ubuntu22.04
+
+ENV DEBIAN_FRONTEND=noninteractive
+ENV NVIDIA_VISIBLE_DEVICES=all
+ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility
+
+# Install system dependencies, Python, and Chromium bits needed for Kaleido
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    python3 \
+    python3-pip \
+    python3-dev \
+    python3-venv \
+    ca-certificates \
+    build-essential \
+    gnupg \
+    libblas-dev \
+    liblapack-dev \
+    libgomp1 \
+    libopenblas-dev \
+    unzip \
+    pkg-config \
+    libfreetype6-dev \
+    libpng-dev \
+    libqhull-dev \
+    fonts-liberation \
+    libasound2 \
+    libatk-bridge2.0-0 \
+    libatk1.0-0 \
+    libcairo2 \
+    libcups2 \
+    libdbus-1-3 \
+    libexpat1 \
+    libfontconfig1 \
+    libgbm1 \
+    libgcc1 \
+    libglib2.0-0 \
+    libgtk-3-0 \
+    libnspr4 \
+    libnss3 \
+    libpango-1.0-0 \
+    libpangocairo-1.0-0 \
+    libstdc++6 \
+    libx11-6 \
+    libx11-xcb1 \
+    libxcb1 \
+    libxcomposite1 \
+    libxcursor1 \
+    libxdamage1 \
+    libxext6 \
+    libxfixes3 \
+    libxi6 \
+    libxrandr2 \
+    libxrender1 \
+    libxtst6 \
+    lsb-release \
+    wget \
+    xdg-utils \
+    && ln -sf /usr/bin/python3 /usr/bin/python \
+    && ln -sf /usr/bin/pip3 /usr/bin/pip \
+    && rm -rf /var/lib/apt/lists/*
+
+# Pin setuptools <81 to avoid pkg_resources warnings and upgrade pip/wheel
+RUN pip install --no-cache-dir 'setuptools<81.0.0' && \
+    pip install --no-cache-dir --upgrade pip wheel
+
+# Install GPU-enabled PyTorch stack before AutoGluon so it picks up CUDA
+RUN pip install --no-cache-dir \
+    --index-url https://download.pytorch.org/whl/cu118 \
+    --extra-index-url https://pypi.org/simple \
+    torch==2.1.2 \
+    torchvision==0.16.2 \
+    torchaudio==2.1.2
+
+# Core Python dependencies
+RUN pip install --no-cache-dir \
+    autogluon==1.4.0 \
+    pyarrow==20.0.0 \
+    matplotlib \
+    seaborn \
+    shap
+
+# Update kaleido for plotting support
+RUN pip install --no-cache-dir --upgrade kaleido
+
+RUN apt-get update && apt-get install -y curl \
+    && curl -fsSL https://deb.nodesource.com/setup_18.x | bash - \
+    && apt-get install -y nodejs \
+    && npm install -g yarn \
+    && rm -rf /var/lib/apt/lists/*