Mercurial > repos > goeckslab > pycaret_compare
comparison pycaret_train.xml @ 2:009b18a75dc3 draft default tip
planemo upload for repository https://github.com/goeckslab/Galaxy-Pycaret commit 9497c4faca7063bcbb6b201ab6d0dd1570f22acb
| author | goeckslab |
|---|---|
| date | Sat, 14 Dec 2024 23:18:02 +0000 |
| parents | f6def1b90150 |
| children |
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| 1:f6def1b90150 | 2:009b18a75dc3 |
|---|---|
| 4 <import>pycaret_macros.xml</import> | 4 <import>pycaret_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="python_requirements" /> | 6 <expand macro="python_requirements" /> |
| 7 <command> | 7 <command> |
| 8 <![CDATA[ | 8 <![CDATA[ |
| 9 python $__tool_directory__/pycaret_train.py --input_file $input_file --target_col $target_feature --output_dir . --random_seed $random_seed | 9 python $__tool_directory__/pycaret_train.py --input_file '$input_file' --target_col '$target_feature' --output_dir '.' --random_seed '$random_seed' |
| 10 #if $model_type == "classification" | 10 #if $model_type == "classification" |
| 11 #if $classification_models | 11 #if $classification_models |
| 12 --models $classification_models | 12 --models '$classification_models' |
| 13 #end if | 13 #end if |
| 14 #end if | 14 #end if |
| 15 #if $model_type == "regression" | 15 #if $model_type == "regression" |
| 16 #if $regression_models | 16 #if $regression_models |
| 17 --models $regression_models | 17 --models '$regression_models' |
| 18 #end if | 18 #end if |
| 19 #end if | 19 #end if |
| 20 #if $customize_defaults == "true" | 20 #if $customize_defaults == "true" |
| 21 #if $train_size | 21 #if $train_size |
| 22 --train_size $train_size | 22 --train_size '$train_size' |
| 23 #end if | 23 #end if |
| 24 #if $normalize | 24 #if $normalize |
| 25 --normalize | 25 --normalize |
| 26 #end if | 26 #end if |
| 27 #if $feature_selection | 27 #if $feature_selection |
| 29 #end if | 29 #end if |
| 30 #if $enable_cross_validation == "true" | 30 #if $enable_cross_validation == "true" |
| 31 --cross_validation | 31 --cross_validation |
| 32 #end if | 32 #end if |
| 33 #if $cross_validation_folds | 33 #if $cross_validation_folds |
| 34 --cross_validation_folds $cross_validation_folds | 34 --cross_validation_folds '$cross_validation_folds' |
| 35 #end if | 35 #end if |
| 36 #if $remove_outliers | 36 #if $remove_outliers |
| 37 --remove_outliers | 37 --remove_outliers |
| 38 #end if | 38 #end if |
| 39 #if $remove_multicollinearity | 39 #if $remove_multicollinearity |
| 45 #if $fix_imbalance | 45 #if $fix_imbalance |
| 46 --fix_imbalance | 46 --fix_imbalance |
| 47 #end if | 47 #end if |
| 48 #end if | 48 #end if |
| 49 #if $test_file | 49 #if $test_file |
| 50 --test_file $test_file | 50 --test_file '$test_file' |
| 51 #end if | 51 #end if |
| 52 --model_type $model_type | 52 --model_type '$model_type' |
| 53 ]]> | 53 ]]> |
| 54 </command> | 54 </command> |
| 55 <inputs> | 55 <inputs> |
| 56 <param name="input_file" type="data" format="csv,tabular" label="Train Dataset (CSV or TSV)" /> | 56 <param name="input_file" type="data" format="csv,tabular" label="Train Dataset (CSV or TSV)" /> |
| 57 <param name="test_file" type="data" format="csv,tabular" optional="true" label="Test Dataset (CSV or TSV)" | 57 <param name="test_file" type="data" format="csv,tabular" optional="true" label="Test Dataset (CSV or TSV)" |