# HG changeset patch
# User goeckslab
# Date 1721079464 0
# Node ID 815efbdbb7b24a15a3262382963b221748efd3d9
# Parent 8969e16f3701351d5c5dcd8346ca12cad099d140
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/mti-utils commit 5c324d06ad54dca76aa2b4c8118df5654f49da66
diff -r 8969e16f3701 -r 815efbdbb7b2 macros.xml
--- a/macros.xml Thu Jul 11 22:41:17 2024 +0000
+++ b/macros.xml Mon Jul 15 21:37:44 2024 +0000
@@ -16,6 +16,6 @@
0.0.2
- 0
+ 1
19.01
diff -r 8969e16f3701 -r 815efbdbb7b2 scale_cell_coordinates.xml
--- a/scale_cell_coordinates.xml Thu Jul 11 22:41:17 2024 +0000
+++ b/scale_cell_coordinates.xml Mon Jul 15 21:37:44 2024 +0000
@@ -1,5 +1,5 @@
-
+ in single-cell spatial data
macros.xml
diff -r 8969e16f3701 -r 815efbdbb7b2 test-data/rename_channels.csv
--- a/test-data/rename_channels.csv Thu Jul 11 22:41:17 2024 +0000
+++ b/test-data/rename_channels.csv Mon Jul 15 21:37:44 2024 +0000
@@ -1,3 +1,20 @@
-channel_number,cycle_number,marker_name,Filter,excitation_wavelength,emission_wavelength
-0,6,DNA_6,DAPI,395,431
-0,6,DNA_7,DAPI,395,431
\ No newline at end of file
+channel_number,marker_name
+1,Hematoxylin
+2,HLA_DRDPDQ
+3,DCLAMP
+4,CD3
+5,CD45
+6,CD8
+7,GRZB
+8,CD20
+9,CD11b
+10,CD66b
+11,CD11c
+12,CD163
+13,HLA-ClassI
+14,EOMES
+15,FOXP3
+16,Ki67
+17,panCK
+18,PD-1
+19,PD-L1
diff -r 8969e16f3701 -r 815efbdbb7b2 test-data/rename_test.ome.tiff
Binary file test-data/rename_test.ome.tiff has changed
diff -r 8969e16f3701 -r 815efbdbb7b2 test-data/test.xml
--- a/test-data/test.xml Thu Jul 11 22:41:17 2024 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-
-