comparison squidpy_spatial.py @ 3:d30ef0613122 draft

planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/squidpy commit 3c79b731a6c4379bfb0491ceebf767789c8b79c4

2:4a058bd23a12

        if k == 'genes':    # for spatial_autocorr and sepal
            options[k] = [e.strip() for e in v.split(',')]
        elif k == 'radius':    # for spatial_neighbors
            options[k] = ast.literal_eval(v)
        elif k == 'numba_parallel':    # for nhood_enrichment and ligrec
            if v == 'false':
                options[k] = False
            elif v == 'true':
                options[k] = True
        elif k == 'interactions':    # for ligrec
            options[k] = pd.read_csv(v, sep="\t")
        elif k == 'max_neighs':
            options[k] = int(v)      # for sepal

3:d30ef0613122

        if k == 'genes':    # for spatial_autocorr and sepal
            options[k] = [e.strip() for e in v.split(',')]
        elif k == 'radius':    # for spatial_neighbors
            options[k] = ast.literal_eval(v)
        elif k == 'interactions':    # for ligrec
            options[k] = pd.read_csv(v, sep="\t")
        elif k == 'max_neighs':
            options[k] = int(v)      # for sepal